miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 152222 0.68 0.73038
Target:  5'- cCCGcaGCUGCUGCAGGaacacguUGUcGCGGUACg -3'
miRNA:   3'- cGGC--UGGCGGCGUCC-------ACGcUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 195790 0.68 0.722036
Target:  5'- gGCgGACCGCgggcccugCGCugaagggucGGGUGgGACGGUGa -3'
miRNA:   3'- -CGgCUGGCG--------GCG---------UCCACgCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 100554 0.68 0.722036
Target:  5'- uCUG-CCGCCGCuGGUGCGcuuGCGGc-- -3'
miRNA:   3'- cGGCuGGCGGCGuCCACGC---UGCCaug -5'
15938 5' -60.3 NC_004065.1 + 98820 0.68 0.716442
Target:  5'- gGCCgGACggauuuauuccuugaCGCaaGCAGGaUGCGugGGUGCg -3'
miRNA:   3'- -CGG-CUG---------------GCGg-CGUCC-ACGCugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 28844 0.68 0.7127
Target:  5'- aGCCggGACgCGCCGCuuGGUGuCGGCGcUGCu -3'
miRNA:   3'- -CGG--CUG-GCGGCGu-CCAC-GCUGCcAUG- -5'
15938 5' -60.3 NC_004065.1 + 63531 0.68 0.7127
Target:  5'- gGCCguaGAUCGCCGCGagcguguucuuGGUgGCGGCGGagACg -3'
miRNA:   3'- -CGG---CUGGCGGCGU-----------CCA-CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 146744 0.68 0.7127
Target:  5'- gGUCGGCCGCCGCgAGGc-CGGuCGaGUACu -3'
miRNA:   3'- -CGGCUGGCGGCG-UCCacGCU-GC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 27843 0.68 0.703304
Target:  5'- gGCUGGCCgugguGCCGCGGG-GCGAacUGGUc- -3'
miRNA:   3'- -CGGCUGG-----CGGCGUCCaCGCU--GCCAug -5'
15938 5' -60.3 NC_004065.1 + 60540 0.68 0.703304
Target:  5'- aGCCGACgaaGCCGCcGGaGaCGACGGagACg -3'
miRNA:   3'- -CGGCUGg--CGGCGuCCaC-GCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 118289 0.69 0.693854
Target:  5'- -aCGACCacGUCGCAGGcgaagGCGACGGcgaUGCc -3'
miRNA:   3'- cgGCUGG--CGGCGUCCa----CGCUGCC---AUG- -5'
15938 5' -60.3 NC_004065.1 + 125603 0.69 0.69101
Target:  5'- gGCCGugCGCgGCGGGU-CGAUGcgcgccugguagaaGUGCa -3'
miRNA:   3'- -CGGCugGCGgCGUCCAcGCUGC--------------CAUG- -5'
15938 5' -60.3 NC_004065.1 + 229655 0.69 0.684359
Target:  5'- gGCCGGCgGCagugGCAGGUggGCGuCGGgGCg -3'
miRNA:   3'- -CGGCUGgCGg---CGUCCA--CGCuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 130477 0.69 0.684359
Target:  5'- gGCCGuCCGCCGCGGcga-GACGGgaGCg -3'
miRNA:   3'- -CGGCuGGCGGCGUCcacgCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 82795 0.69 0.674826
Target:  5'- cGCCGACCcauCCGgGGGUGgGGaaGUACu -3'
miRNA:   3'- -CGGCUGGc--GGCgUCCACgCUgcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 7576 0.69 0.665262
Target:  5'- aUCGugCGUCGuCGGGUcCGGCGGUAa -3'
miRNA:   3'- cGGCugGCGGC-GUCCAcGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 77734 0.69 0.655675
Target:  5'- cGCCG-CCGCCGCAGGacuggGCGAgcuccucgaccUGGa-- -3'
miRNA:   3'- -CGGCuGGCGGCGUCCa----CGCU-----------GCCaug -5'
15938 5' -60.3 NC_004065.1 + 141624 0.69 0.655675
Target:  5'- uGCCGGCgGUgGCGGcucgGCGACGGaggGCg -3'
miRNA:   3'- -CGGCUGgCGgCGUCca--CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 74831 0.69 0.655675
Target:  5'- cGCCcgggucggGACCGaggggCGCAGGUugagGCGGCGGUGg -3'
miRNA:   3'- -CGG--------CUGGCg----GCGUCCA----CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 56702 0.69 0.654715
Target:  5'- -aCGAcucuucuCCGCCGCAGcGgcgGCGGCGGcgGCa -3'
miRNA:   3'- cgGCU-------GGCGGCGUC-Ca--CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 109258 0.69 0.651835
Target:  5'- uGCCaGAUCguaccguggaaggaGCgGCAGGUGCugagcauGACGGUGCg -3'
miRNA:   3'- -CGG-CUGG--------------CGgCGUCCACG-------CUGCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.