miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 4084 0.67 0.775475
Target:  5'- -aCGAgcaacacCCGCCGCGGGaGaCGACGGgaaGCg -3'
miRNA:   3'- cgGCU-------GGCGGCGUCCaC-GCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 6233 0.67 0.802075
Target:  5'- uGCCGcACCgGCUGgAGGUaguccugucguGCGGCGGggACg -3'
miRNA:   3'- -CGGC-UGG-CGGCgUCCA-----------CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 7403 1.11 0.001506
Target:  5'- gGCCGACCGCCGCAGGUGCGACGGUACg -3'
miRNA:   3'- -CGGCUGGCGGCGUCCACGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 7576 0.69 0.665262
Target:  5'- aUCGugCGUCGuCGGGUcCGGCGGUAa -3'
miRNA:   3'- cGGCugGCGGC-GUCCAcGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 17260 0.7 0.623955
Target:  5'- cGUCGAccuccucuucuucaCCGCCGgaggugguguCGGGUGCGGCGGagACa -3'
miRNA:   3'- -CGGCU--------------GGCGGC----------GUCCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 18130 0.7 0.62684
Target:  5'- uCCGGgcCCGCCGCGGGacgggaUGuUGGCGGUAUc -3'
miRNA:   3'- cGGCU--GGCGGCGUCC------AC-GCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 21313 0.72 0.504276
Target:  5'- uGCaCGACCGCCuCGGcGUGCGcgGCGGUcaACa -3'
miRNA:   3'- -CG-GCUGGCGGcGUC-CACGC--UGCCA--UG- -5'
15938 5' -60.3 NC_004065.1 + 22294 0.66 0.818556
Target:  5'- uUCGAUCGUCGguGGgGUGgACGGUGa -3'
miRNA:   3'- cGGCUGGCGGCguCCaCGC-UGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 24599 0.66 0.818556
Target:  5'- cGCCGccaccGCCGCCGCcGGUGUuGCGa--- -3'
miRNA:   3'- -CGGC-----UGGCGGCGuCCACGcUGCcaug -5'
15938 5' -60.3 NC_004065.1 + 27843 0.68 0.703304
Target:  5'- gGCUGGCCgugguGCCGCGGG-GCGAacUGGUc- -3'
miRNA:   3'- -CGGCUGG-----CGGCGUCCaCGCU--GCCAug -5'
15938 5' -60.3 NC_004065.1 + 28740 0.66 0.818556
Target:  5'- cCCGGCCGCCGgAGG-GCcAaaGUACu -3'
miRNA:   3'- cGGCUGGCGGCgUCCaCGcUgcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 28844 0.68 0.7127
Target:  5'- aGCCggGACgCGCCGCuuGGUGuCGGCGcUGCu -3'
miRNA:   3'- -CGG--CUG-GCGGCGu-CCAC-GCUGCcAUG- -5'
15938 5' -60.3 NC_004065.1 + 30884 0.66 0.857033
Target:  5'- uUCGAgCGcCCGCAGG-GCGuCGGggucGCa -3'
miRNA:   3'- cGGCUgGC-GGCGUCCaCGCuGCCa---UG- -5'
15938 5' -60.3 NC_004065.1 + 31476 0.71 0.559967
Target:  5'- uCCGuGCCGCgCGCGgaccuGGUGCGGCugaGGUACa -3'
miRNA:   3'- cGGC-UGGCG-GCGU-----CCACGCUG---CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 31666 0.73 0.468506
Target:  5'- cGCCGACCacccgGCgGUcccaagcgaAGGUGCGuCGGUGCc -3'
miRNA:   3'- -CGGCUGG-----CGgCG---------UCCACGCuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 31708 0.71 0.559023
Target:  5'- gGCCGuuCCGCgGCAuGUGCGaccccgaguucaaGCGGUGCu -3'
miRNA:   3'- -CGGCu-GGCGgCGUcCACGC-------------UGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 35502 0.66 0.849675
Target:  5'- gGCaCGACCGgCGUcuuGGagGCGACGGa-- -3'
miRNA:   3'- -CG-GCUGGCgGCGu--CCa-CGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 45537 0.66 0.810387
Target:  5'- cCCGG-CGCCGCGGcG-GCGGCGGc-- -3'
miRNA:   3'- cGGCUgGCGGCGUC-CaCGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 47321 0.7 0.636457
Target:  5'- gGCCGAuCCGCgGCGGGggGCaACGGa-- -3'
miRNA:   3'- -CGGCU-GGCGgCGUCCa-CGcUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 48094 0.66 0.856306
Target:  5'- cGCgGACCuguggcgGCgGCGGuGgcgGCGGCGGUGg -3'
miRNA:   3'- -CGgCUGG-------CGgCGUC-Ca--CGCUGCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.