miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 48450 0.74 0.393197
Target:  5'- aCCGuACCcagGCUGCAGGagGUGACGGUGCc -3'
miRNA:   3'- cGGC-UGG---CGGCGUCCa-CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 51125 0.67 0.758621
Target:  5'- cGCCGAUUGCUGCGGcacGUaGCGGCGcgacuuccaGUACa -3'
miRNA:   3'- -CGGCUGGCGGCGUC---CA-CGCUGC---------CAUG- -5'
15938 5' -60.3 NC_004065.1 + 52657 0.75 0.354895
Target:  5'- cUUGGCCGCCGCuGGcgGUGGCGGUGg -3'
miRNA:   3'- cGGCUGGCGGCGuCCa-CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 56702 0.69 0.654715
Target:  5'- -aCGAcucuucuCCGCCGCAGcGgcgGCGGCGGcgGCa -3'
miRNA:   3'- cgGCU-------GGCGGCGUC-Ca--CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 57460 0.66 0.83444
Target:  5'- cGCCG-UCGUgGCGauGGcGCGGCGGUGg -3'
miRNA:   3'- -CGGCuGGCGgCGU--CCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 59752 0.71 0.550547
Target:  5'- uGCCGACCGCguggccgaUGguGGcgGCGGCGGccACg -3'
miRNA:   3'- -CGGCUGGCG--------GCguCCa-CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 60339 0.7 0.636457
Target:  5'- uGCCGG-CGCCGUAcgcguuGGUGCGcACGGUc- -3'
miRNA:   3'- -CGGCUgGCGGCGU------CCACGC-UGCCAug -5'
15938 5' -60.3 NC_004065.1 + 60540 0.68 0.703304
Target:  5'- aGCCGACgaaGCCGCcGGaGaCGACGGagACg -3'
miRNA:   3'- -CGGCUGg--CGGCGuCCaC-GCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 63531 0.68 0.7127
Target:  5'- gGCCguaGAUCGCCGCGagcguguucuuGGUgGCGGCGGagACg -3'
miRNA:   3'- -CGG---CUGGCGGCGU-----------CCA-CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 65338 0.66 0.849675
Target:  5'- cGgCGGCagcaGCUGCGGGUGgGuCGGUc- -3'
miRNA:   3'- -CgGCUGg---CGGCGUCCACgCuGCCAug -5'
15938 5' -60.3 NC_004065.1 + 65656 0.68 0.749604
Target:  5'- uGCCGcuGCCGCCGCAGGaagaucCGACGc--- -3'
miRNA:   3'- -CGGC--UGGCGGCGUCCac----GCUGCcaug -5'
15938 5' -60.3 NC_004065.1 + 66607 0.71 0.569431
Target:  5'- cGCgGACaggauccggaGCCGCGGGcUGCGGCGcUGCg -3'
miRNA:   3'- -CGgCUGg---------CGGCGUCC-ACGCUGCcAUG- -5'
15938 5' -60.3 NC_004065.1 + 74831 0.69 0.655675
Target:  5'- cGCCcgggucggGACCGaggggCGCAGGUugagGCGGCGGUGg -3'
miRNA:   3'- -CGG--------CUGGCg----GCGUCCA----CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 77734 0.69 0.655675
Target:  5'- cGCCG-CCGCCGCAGGacuggGCGAgcuccucgaccUGGa-- -3'
miRNA:   3'- -CGGCuGGCGGCGUCCa----CGCU-----------GCCaug -5'
15938 5' -60.3 NC_004065.1 + 82795 0.69 0.674826
Target:  5'- cGCCGACCcauCCGgGGGUGgGGaaGUACu -3'
miRNA:   3'- -CGGCUGGc--GGCgUCCACgCUgcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 83298 0.67 0.792774
Target:  5'- gGCCGACCGCUGCcucGUGaagaugagauacaCGACGGcuaGCa -3'
miRNA:   3'- -CGGCUGGCGGCGuc-CAC-------------GCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 87607 0.67 0.793626
Target:  5'- aGCCGGCgCGCCgGCAGGcGaaaGAUGGcccGCg -3'
miRNA:   3'- -CGGCUG-GCGG-CGUCCaCg--CUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 88435 0.67 0.793626
Target:  5'- cGCCG-CCGUCGCGuugGUGGCGGUcGCc -3'
miRNA:   3'- -CGGCuGGCGGCGUccaCGCUGCCA-UG- -5'
15938 5' -60.3 NC_004065.1 + 88921 0.72 0.513404
Target:  5'- cGUCGGCgaUGCCGCugaAGGcGCGGCGGUAg -3'
miRNA:   3'- -CGGCUG--GCGGCG---UCCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 96574 0.68 0.740495
Target:  5'- cGCCGACgaGCCGCGacGcGUgGCGACGcUGCa -3'
miRNA:   3'- -CGGCUGg-CGGCGU--C-CA-CGCUGCcAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.