miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 97016 0.7 0.617227
Target:  5'- uGCCGcugcugcuACUGUCGUGGGUGCuGCGcGUGCg -3'
miRNA:   3'- -CGGC--------UGGCGGCGUCCACGcUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 97486 0.66 0.818556
Target:  5'- gGCCcgGAgUGCCGCAGcGaucUGCGGCGGa-- -3'
miRNA:   3'- -CGG--CUgGCGGCGUC-C---ACGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 97557 0.66 0.849675
Target:  5'- cGCCuGCUGCaGCGGGUGCuugaaagacaggGGCGG-ACg -3'
miRNA:   3'- -CGGcUGGCGgCGUCCACG------------CUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 98164 0.68 0.749604
Target:  5'- cGCCGccACCGCCGCcuAGGcucaGCG-UGGUAUu -3'
miRNA:   3'- -CGGC--UGGCGGCG--UCCa---CGCuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 98608 0.66 0.854845
Target:  5'- cGCCGGuccgcagcaugguuUCGCCGCcuucGGUGCGcuCGGUcGCu -3'
miRNA:   3'- -CGGCU--------------GGCGGCGu---CCACGCu-GCCA-UG- -5'
15938 5' -60.3 NC_004065.1 + 98820 0.68 0.716442
Target:  5'- gGCCgGACggauuuauuccuugaCGCaaGCAGGaUGCGugGGUGCg -3'
miRNA:   3'- -CGG-CUG---------------GCGg-CGUCC-ACGCugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 99124 0.67 0.757724
Target:  5'- uUUGACgGCaaCGCAGGUGCGgccgacgGCGGUAa -3'
miRNA:   3'- cGGCUGgCG--GCGUCCACGC-------UGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 99861 0.71 0.541176
Target:  5'- cCCGAUCGCCGCc-GUGCGAgGGg-- -3'
miRNA:   3'- cGGCUGGCGGCGucCACGCUgCCaug -5'
15938 5' -60.3 NC_004065.1 + 99939 0.75 0.362342
Target:  5'- cGCCgGACCGCCGCg---GCGGCGGcUGCu -3'
miRNA:   3'- -CGG-CUGGCGGCGuccaCGCUGCC-AUG- -5'
15938 5' -60.3 NC_004065.1 + 99953 0.7 0.62684
Target:  5'- cGCCGuagucgaccACCGCCGCGGcGUGCu-CGGgccGCg -3'
miRNA:   3'- -CGGC---------UGGCGGCGUC-CACGcuGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 100554 0.68 0.722036
Target:  5'- uCUG-CCGCCGCuGGUGCGcuuGCGGc-- -3'
miRNA:   3'- cGGCuGGCGGCGuCCACGC---UGCCaug -5'
15938 5' -60.3 NC_004065.1 + 102380 0.7 0.607624
Target:  5'- cGCCGcccucGgCGCCGCAGcGgcagcGCGAgCGGUGCa -3'
miRNA:   3'- -CGGC-----UgGCGGCGUC-Ca----CGCU-GCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 102467 0.66 0.857033
Target:  5'- cGUCGACgucccacucguCGCaguaGCAGGgcacgGCGACGGgGCc -3'
miRNA:   3'- -CGGCUG-----------GCGg---CGUCCa----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 102903 0.73 0.439153
Target:  5'- cGCCG-CCGCCGCgauGGGggagaacuggacgGCGACGGaGCu -3'
miRNA:   3'- -CGGCuGGCGGCG---UCCa------------CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 104415 0.66 0.810387
Target:  5'- aGCCgGugCGCCuuuuGUGGG-GCagaGACGGUACg -3'
miRNA:   3'- -CGG-CugGCGG----CGUCCaCG---CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 104677 0.71 0.551487
Target:  5'- cGCCGGagggucacgaggcgaCGCUGCAGGUGCuGCGGg-- -3'
miRNA:   3'- -CGGCUg--------------GCGGCGUCCACGcUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 104883 0.71 0.559967
Target:  5'- gGCUGAUCGCCacGCGGcuggGCGACGGcGCg -3'
miRNA:   3'- -CGGCUGGCGG--CGUCca--CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 105426 0.73 0.468506
Target:  5'- uGCUGGCCGCgcuggUGCGGGacgugGCGACGG-ACg -3'
miRNA:   3'- -CGGCUGGCG-----GCGUCCa----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 105642 0.7 0.598037
Target:  5'- uGCCGaaGCUGCUGCAGGaGUaccuGACGGUGa -3'
miRNA:   3'- -CGGC--UGGCGGCGUCCaCG----CUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 105747 0.66 0.810387
Target:  5'- -aCGACUucCCGCAguaccagcGGUGCGACGGcgGCu -3'
miRNA:   3'- cgGCUGGc-GGCGU--------CCACGCUGCCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.