miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 107461 0.66 0.857033
Target:  5'- gGgCGuCUGCCGCAGGaggaagGCuccGACGGUGu -3'
miRNA:   3'- -CgGCuGGCGGCGUCCa-----CG---CUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 107505 0.71 0.550547
Target:  5'- cGCuCGACCGCuCGCacgaggAGGUGCGcGCGGcgACc -3'
miRNA:   3'- -CG-GCUGGCG-GCG------UCCACGC-UGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 109258 0.69 0.651835
Target:  5'- uGCCaGAUCguaccguggaaggaGCgGCAGGUGCugagcauGACGGUGCg -3'
miRNA:   3'- -CGG-CUGG--------------CGgCGUCCACG-------CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 109480 0.66 0.857033
Target:  5'- cGCCGACCGCCGCcGGcacacCGGa-- -3'
miRNA:   3'- -CGGCUGGCGGCGuCCacgcuGCCaug -5'
15938 5' -60.3 NC_004065.1 + 109852 0.73 0.451114
Target:  5'- gGCC-AUCG-CGCAGGUGCcgGGCGGUGCc -3'
miRNA:   3'- -CGGcUGGCgGCGUCCACG--CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 113142 0.7 0.617227
Target:  5'- aCCcACCGCCGCA--UGCgGugGGUGCa -3'
miRNA:   3'- cGGcUGGCGGCGUccACG-CugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 114447 0.67 0.758621
Target:  5'- cGCCGccaccaccACCGCCGUcucaccaucgcGGcgGUGGCGGUACu -3'
miRNA:   3'- -CGGC--------UGGCGGCGu----------CCa-CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 115197 0.67 0.802075
Target:  5'- uCCGGCCGUgGCcGccGCGACGGgGCa -3'
miRNA:   3'- cGGCUGGCGgCGuCcaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 115562 0.74 0.393197
Target:  5'- cGCC-ACCGCCGCGauGGUGagaCGGCGGUGg -3'
miRNA:   3'- -CGGcUGGCGGCGU--CCAC---GCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 116003 0.72 0.495218
Target:  5'- cGCCGACgugCGCCGCGGGggcagcucucUGCcGACGGg-- -3'
miRNA:   3'- -CGGCUG---GCGGCGUCC----------ACG-CUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 116320 0.68 0.749604
Target:  5'- cGUCGGCgGCgGCAGcG-GCGACGGc-- -3'
miRNA:   3'- -CGGCUGgCGgCGUC-CaCGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 116831 0.7 0.617227
Target:  5'- aGCgUGGCCGUgaUGguGGUGCaGugGGUGCc -3'
miRNA:   3'- -CG-GCUGGCG--GCguCCACG-CugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 118289 0.69 0.693854
Target:  5'- -aCGACCacGUCGCAGGcgaagGCGACGGcgaUGCc -3'
miRNA:   3'- cgGCUGG--CGGCGUCCa----CGCUGCC---AUG- -5'
15938 5' -60.3 NC_004065.1 + 120194 0.66 0.826577
Target:  5'- gGCCccCCGCCGCAGcaggacgGCGACGaGgGCg -3'
miRNA:   3'- -CGGcuGGCGGCGUCca-----CGCUGC-CaUG- -5'
15938 5' -60.3 NC_004065.1 + 121416 0.67 0.792774
Target:  5'- cGCaGACC-CUGCAGGUacuggagGCGAUGcGUGCg -3'
miRNA:   3'- -CGgCUGGcGGCGUCCA-------CGCUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 121476 0.66 0.83444
Target:  5'- gGUCGGCgCGuCCGCGGGcGUGAaGGUGg -3'
miRNA:   3'- -CGGCUG-GC-GGCGUCCaCGCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 123875 0.75 0.354895
Target:  5'- uCCGcACgCGCCGCAGGUGCG-CcGUGCa -3'
miRNA:   3'- cGGC-UG-GCGGCGUCCACGCuGcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 125603 0.69 0.69101
Target:  5'- gGCCGugCGCgGCGGGU-CGAUGcgcgccugguagaaGUGCa -3'
miRNA:   3'- -CGGCugGCGgCGUCCAcGCUGC--------------CAUG- -5'
15938 5' -60.3 NC_004065.1 + 125875 0.68 0.749604
Target:  5'- aCCGAcaCCGCCGCGGaagGCGACGa--- -3'
miRNA:   3'- cGGCU--GGCGGCGUCca-CGCUGCcaug -5'
15938 5' -60.3 NC_004065.1 + 127643 0.67 0.793626
Target:  5'- cGCUG-CCGCUGCGGcGccgaggGCGGCGGgACc -3'
miRNA:   3'- -CGGCuGGCGGCGUC-Ca-----CGCUGCCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.