miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 229655 0.69 0.684359
Target:  5'- gGCCGGCgGCagugGCAGGUggGCGuCGGgGCg -3'
miRNA:   3'- -CGGCUGgCGg---CGUCCA--CGCuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 225162 0.66 0.857033
Target:  5'- gGgUGACCgaGCCG-AGG-GCGGCGGUGg -3'
miRNA:   3'- -CgGCUGG--CGGCgUCCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 222639 0.7 0.594208
Target:  5'- gGUCGGCCcuuuacauacucaCCGCAGGUGUGgGCGGUGa -3'
miRNA:   3'- -CGGCUGGc------------GGCGUCCACGC-UGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 221456 0.66 0.818556
Target:  5'- aCCGG-CGCaaCAGGUGCGcCGGUAUu -3'
miRNA:   3'- cGGCUgGCGgcGUCCACGCuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 211939 0.66 0.818556
Target:  5'- uGCCGGCCa-CG-AGGcUGCGGCGGUcGCu -3'
miRNA:   3'- -CGGCUGGcgGCgUCC-ACGCUGCCA-UG- -5'
15938 5' -60.3 NC_004065.1 + 209572 0.68 0.740495
Target:  5'- gGCCGGCUGCUgGCGGGcGUG-CGGUc- -3'
miRNA:   3'- -CGGCUGGCGG-CGUCCaCGCuGCCAug -5'
15938 5' -60.3 NC_004065.1 + 209305 0.66 0.826577
Target:  5'- cGCCGucgUCGCCGUcGGUGcCGuCGuGUGCu -3'
miRNA:   3'- -CGGCu--GGCGGCGuCCAC-GCuGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 207117 0.73 0.433241
Target:  5'- cGCCGACCGCCGCcacugaccgcguuGGGaggcUGCGACagcagcGUGCu -3'
miRNA:   3'- -CGGCUGGCGGCG-------------UCC----ACGCUGc-----CAUG- -5'
15938 5' -60.3 NC_004065.1 + 205513 0.73 0.451114
Target:  5'- cGCCGccaucuugggGCCGgCGCucAGGgccgGCGGCGGUGCc -3'
miRNA:   3'- -CGGC----------UGGCgGCG--UCCa---CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 202484 0.67 0.78505
Target:  5'- uGUCGACCuGCgGCGcGUGCGAgUGGUGg -3'
miRNA:   3'- -CGGCUGG-CGgCGUcCACGCU-GCCAUg -5'
15938 5' -60.3 NC_004065.1 + 200522 0.66 0.850419
Target:  5'- uCgGAUCGCCGCgcacAGGgcguccauggcgaggGCGACGGgcgGCa -3'
miRNA:   3'- cGgCUGGCGGCG----UCCa--------------CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 199848 0.72 0.486235
Target:  5'- gGCCaccACCGCCGCAGGcacuCGuCGGUGCc -3'
miRNA:   3'- -CGGc--UGGCGGCGUCCac--GCuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 197363 0.72 0.477329
Target:  5'- gGCCGAuucuCCGCCGCGGGccgugGCGAUGuugACa -3'
miRNA:   3'- -CGGCU----GGCGGCGUCCa----CGCUGCca-UG- -5'
15938 5' -60.3 NC_004065.1 + 196822 0.73 0.425708
Target:  5'- gGUCGuggucacCUGCgGCAGGUgcggGCGACGGUACa -3'
miRNA:   3'- -CGGCu------GGCGgCGUCCA----CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 195790 0.68 0.722036
Target:  5'- gGCgGACCGCgggcccugCGCugaagggucGGGUGgGACGGUGa -3'
miRNA:   3'- -CGgCUGGCG--------GCG---------UCCACgCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 191249 0.7 0.588472
Target:  5'- cGCCaGACCGUCaGCccGGUGUGgaaACGGUACu -3'
miRNA:   3'- -CGG-CUGGCGG-CGu-CCACGC---UGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 187990 0.7 0.623955
Target:  5'- -gCGGCCGCgCGCaacauggcucgcggAGGUccGCGACGGUAg -3'
miRNA:   3'- cgGCUGGCG-GCG--------------UCCA--CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 187391 0.66 0.826577
Target:  5'- aGCUGGCgCGCgGCGcGGUGUGGCGucgaggGCg -3'
miRNA:   3'- -CGGCUG-GCGgCGU-CCACGCUGCca----UG- -5'
15938 5' -60.3 NC_004065.1 + 184490 0.67 0.793626
Target:  5'- uGCCG-CCGCCGCcgcgGCGcCGGgugGCg -3'
miRNA:   3'- -CGGCuGGCGGCGuccaCGCuGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 181935 0.73 0.425708
Target:  5'- cGCCG-CCGCCaCAGGUccGCGAgGGUGa -3'
miRNA:   3'- -CGGCuGGCGGcGUCCA--CGCUgCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.