miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 173315 0.74 0.409252
Target:  5'- cGCCG-CCGCCGCcGcUGCGGCGGa-- -3'
miRNA:   3'- -CGGCuGGCGGCGuCcACGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 173032 0.68 0.731304
Target:  5'- cGuuGGCUGuuaCCGCuAGGUgGCGACGGaACa -3'
miRNA:   3'- -CggCUGGC---GGCG-UCCA-CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 170315 0.68 0.740495
Target:  5'- cGCCGugCGCCGCGGccGCu-CGGcGCc -3'
miRNA:   3'- -CGGCugGCGGCGUCcaCGcuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 167412 0.75 0.333209
Target:  5'- uGCCGcggcugcuGCCGCCgGCGGGgGCGGCGGcGCu -3'
miRNA:   3'- -CGGC--------UGGCGG-CGUCCaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 167169 0.66 0.847433
Target:  5'- cGCCaccACCGCUGCcgggggagccuucgGGGUGgGugGGggGCa -3'
miRNA:   3'- -CGGc--UGGCGGCG--------------UCCACgCugCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 165495 0.66 0.810387
Target:  5'- cGCCGuCgCGCCGCAGcugcUGCG-UGGUGa -3'
miRNA:   3'- -CGGCuG-GCGGCGUCc---ACGCuGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 163975 0.71 0.550547
Target:  5'- cGCUGuCCGCCGUca--GCGAUGGUGCg -3'
miRNA:   3'- -CGGCuGGCGGCGuccaCGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 163284 0.66 0.857033
Target:  5'- gGUCGcgacGCCGCCG-GGGUcCGACGGcACg -3'
miRNA:   3'- -CGGC----UGGCGGCgUCCAcGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 162400 0.75 0.362342
Target:  5'- aCCGGCaucucgaaCGCCGUAcGGUGCGACGG-ACg -3'
miRNA:   3'- cGGCUG--------GCGGCGU-CCACGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 161409 0.69 0.646071
Target:  5'- cGCCaGCUGCuCGCuguccAGGUGCGACGuGUcgGCg -3'
miRNA:   3'- -CGGcUGGCG-GCG-----UCCACGCUGC-CA--UG- -5'
15938 5' -60.3 NC_004065.1 + 159915 0.67 0.76754
Target:  5'- cGCCG-CCGCCGCcGcUGC--CGGUGCu -3'
miRNA:   3'- -CGGCuGGCGGCGuCcACGcuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 159078 0.67 0.76754
Target:  5'- aCCGACCGCCGCGacc-CGGCGuGUAUu -3'
miRNA:   3'- cGGCUGGCGGCGUccacGCUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 157101 0.67 0.793626
Target:  5'- cCCGACuCGCCGcCGGGgGCGccuucaGCGGggGCa -3'
miRNA:   3'- cGGCUG-GCGGC-GUCCaCGC------UGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 155808 0.7 0.62684
Target:  5'- cGCCGAUUaccaucacggGCU-CAGGUucGCGACGGUGCg -3'
miRNA:   3'- -CGGCUGG----------CGGcGUCCA--CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 154253 0.73 0.450254
Target:  5'- cGCCGACCGCCGCcuccgccucccccGGGUcaGCGcUGGgGCa -3'
miRNA:   3'- -CGGCUGGCGGCG-------------UCCA--CGCuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 154141 0.68 0.740495
Target:  5'- -aCGAUCGCCcCGGGcggugGCGGCGGcgGCg -3'
miRNA:   3'- cgGCUGGCGGcGUCCa----CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 153464 0.71 0.541176
Target:  5'- cGCCGcuuuuCUGCgGCauguguacgggGGGUGCGACaGGUGCg -3'
miRNA:   3'- -CGGCu----GGCGgCG-----------UCCACGCUG-CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 152222 0.68 0.73038
Target:  5'- cCCGcaGCUGCUGCAGGaacacguUGUcGCGGUACg -3'
miRNA:   3'- cGGC--UGGCGGCGUCC-------ACGcUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 151370 0.7 0.627802
Target:  5'- cGCCGGCCGCUGCGcuGGcggccgaucucuuggGUGGCGGagGCg -3'
miRNA:   3'- -CGGCUGGCGGCGU--CCa--------------CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 151196 0.66 0.849675
Target:  5'- gGCaCGugUGCUGCcGGUGCGACu---- -3'
miRNA:   3'- -CG-GCugGCGGCGuCCACGCUGccaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.