miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 148850 0.75 0.354895
Target:  5'- aGgCGGCCGCCGCgaucgaggAGGcgGCGGCGGgggGCg -3'
miRNA:   3'- -CgGCUGGCGGCG--------UCCa-CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 146744 0.68 0.7127
Target:  5'- gGUCGGCCGCCGCgAGGc-CGGuCGaGUACu -3'
miRNA:   3'- -CGGCUGGCGGCG-UCCacGCU-GC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 145691 0.72 0.486235
Target:  5'- -aCGACCGCCGCuaacGG-GCGGgGGUAg -3'
miRNA:   3'- cgGCUGGCGGCGu---CCaCGCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 141624 0.69 0.655675
Target:  5'- uGCCGGCgGUgGCGGcucgGCGACGGaggGCg -3'
miRNA:   3'- -CGGCUGgCGgCGUCca--CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 141354 0.77 0.268053
Target:  5'- cGUCGuCCGCuCGCGGGUGCuGGCGGcGCu -3'
miRNA:   3'- -CGGCuGGCG-GCGUCCACG-CUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 139646 0.67 0.802075
Target:  5'- cGCCGGCUccaagcuguGCgGCGcGUGCGGCGGccGCu -3'
miRNA:   3'- -CGGCUGG---------CGgCGUcCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 135133 0.66 0.810387
Target:  5'- gGgCGGgCGCgGCGGGUGaugaCGACGGggACg -3'
miRNA:   3'- -CgGCUgGCGgCGUCCAC----GCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 132093 0.7 0.598037
Target:  5'- cGCUG-CCGCCGgAGGaacUGCGGguccUGGUACa -3'
miRNA:   3'- -CGGCuGGCGGCgUCC---ACGCU----GCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 130477 0.69 0.684359
Target:  5'- gGCCGuCCGCCGCGGcga-GACGGgaGCg -3'
miRNA:   3'- -CGGCuGGCGGCGUCcacgCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 130160 0.66 0.811211
Target:  5'- gGCCGucgcuauccgcgaccCCGgCGCcaucuGGUGCGACGGgGCc -3'
miRNA:   3'- -CGGCu--------------GGCgGCGu----CCACGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 130087 0.67 0.78505
Target:  5'- aGCCG-CCGCCGCGGcGguccgGCGucAUGG-ACg -3'
miRNA:   3'- -CGGCuGGCGGCGUC-Ca----CGC--UGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 129986 0.72 0.486235
Target:  5'- cGCaGAaCGCCGCGGGgGCGGCGG-ACg -3'
miRNA:   3'- -CGgCUgGCGGCGUCCaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 128395 0.66 0.857033
Target:  5'- aGCCGGCUgugggggccgaGCgGCAGcG-GCGGCGGcGCc -3'
miRNA:   3'- -CGGCUGG-----------CGgCGUC-CaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 127988 0.74 0.377558
Target:  5'- cCCGGCCGCCGCGGGUcacCGA-GGUGg -3'
miRNA:   3'- cGGCUGGCGGCGUCCAc--GCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 127685 0.66 0.856306
Target:  5'- uGCCGACC-UCGCagaGGGUGCucugaucGACGGa-- -3'
miRNA:   3'- -CGGCUGGcGGCG---UCCACG-------CUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 127643 0.67 0.793626
Target:  5'- cGCUG-CCGCUGCGGcGccgaggGCGGCGGgACc -3'
miRNA:   3'- -CGGCuGGCGGCGUC-Ca-----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 125875 0.68 0.749604
Target:  5'- aCCGAcaCCGCCGCGGaagGCGACGa--- -3'
miRNA:   3'- cGGCU--GGCGGCGUCca-CGCUGCcaug -5'
15938 5' -60.3 NC_004065.1 + 125603 0.69 0.69101
Target:  5'- gGCCGugCGCgGCGGGU-CGAUGcgcgccugguagaaGUGCa -3'
miRNA:   3'- -CGGCugGCGgCGUCCAcGCUGC--------------CAUG- -5'
15938 5' -60.3 NC_004065.1 + 123875 0.75 0.354895
Target:  5'- uCCGcACgCGCCGCAGGUGCG-CcGUGCa -3'
miRNA:   3'- cGGC-UG-GCGGCGUCCACGCuGcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 121476 0.66 0.83444
Target:  5'- gGUCGGCgCGuCCGCGGGcGUGAaGGUGg -3'
miRNA:   3'- -CGGCUG-GC-GGCGUCCaCGCUgCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.