miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 187990 0.7 0.623955
Target:  5'- -gCGGCCGCgCGCaacauggcucgcggAGGUccGCGACGGUAg -3'
miRNA:   3'- cgGCUGGCG-GCG--------------UCCA--CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 116003 0.72 0.495218
Target:  5'- cGCCGACgugCGCCGCGGGggcagcucucUGCcGACGGg-- -3'
miRNA:   3'- -CGGCUG---GCGGCGUCC----------ACG-CUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 21313 0.72 0.504276
Target:  5'- uGCaCGACCGCCuCGGcGUGCGcgGCGGUcaACa -3'
miRNA:   3'- -CG-GCUGGCGGcGUC-CACGC--UGCCA--UG- -5'
15938 5' -60.3 NC_004065.1 + 99861 0.71 0.541176
Target:  5'- cCCGAUCGCCGCc-GUGCGAgGGg-- -3'
miRNA:   3'- cGGCUGGCGGCGucCACGCUgCCaug -5'
15938 5' -60.3 NC_004065.1 + 163975 0.71 0.550547
Target:  5'- cGCUGuCCGCCGUca--GCGAUGGUGCg -3'
miRNA:   3'- -CGGCuGGCGGCGuccaCGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 66607 0.71 0.569431
Target:  5'- cGCgGACaggauccggaGCCGCGGGcUGCGGCGcUGCg -3'
miRNA:   3'- -CGgCUGg---------CGGCGUCC-ACGCUGCcAUG- -5'
15938 5' -60.3 NC_004065.1 + 116831 0.7 0.617227
Target:  5'- aGCgUGGCCGUgaUGguGGUGCaGugGGUGCc -3'
miRNA:   3'- -CG-GCUGGCG--GCguCCACG-CugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 97016 0.7 0.617227
Target:  5'- uGCCGcugcugcuACUGUCGUGGGUGCuGCGcGUGCg -3'
miRNA:   3'- -CGGC--------UGGCGGCGUCCACGcUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 17260 0.7 0.623955
Target:  5'- cGUCGAccuccucuucuucaCCGCCGgaggugguguCGGGUGCGGCGGagACa -3'
miRNA:   3'- -CGGCU--------------GGCGGC----------GUCCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 145691 0.72 0.486235
Target:  5'- -aCGACCGCCGCuaacGG-GCGGgGGUAg -3'
miRNA:   3'- cgGCUGGCGGCGu---CCaCGCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 199848 0.72 0.486235
Target:  5'- gGCCaccACCGCCGCAGGcacuCGuCGGUGCc -3'
miRNA:   3'- -CGGc--UGGCGGCGUCCac--GCuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 197363 0.72 0.477329
Target:  5'- gGCCGAuucuCCGCCGCGGGccgugGCGAUGuugACa -3'
miRNA:   3'- -CGGCU----GGCGGCGUCCa----CGCUGCca-UG- -5'
15938 5' -60.3 NC_004065.1 + 123875 0.75 0.354895
Target:  5'- uCCGcACgCGCCGCAGGUGCG-CcGUGCa -3'
miRNA:   3'- cGGC-UG-GCGGCGUCCACGCuGcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 52657 0.75 0.354895
Target:  5'- cUUGGCCGCCGCuGGcgGUGGCGGUGg -3'
miRNA:   3'- cGGCUGGCGGCGuCCa-CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 162400 0.75 0.362342
Target:  5'- aCCGGCaucucgaaCGCCGUAcGGUGCGACGG-ACg -3'
miRNA:   3'- cGGCUG--------GCGGCGU-CCACGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 127988 0.74 0.377558
Target:  5'- cCCGGCCGCCGCGGGUcacCGA-GGUGg -3'
miRNA:   3'- cGGCUGGCGGCGUCCAc--GCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 48450 0.74 0.393197
Target:  5'- aCCGuACCcagGCUGCAGGagGUGACGGUGCc -3'
miRNA:   3'- cGGC-UGG---CGGCGUCCa-CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 196822 0.73 0.425708
Target:  5'- gGUCGuggucacCUGCgGCAGGUgcggGCGACGGUACa -3'
miRNA:   3'- -CGGCu------GGCGgCGUCCA----CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 109852 0.73 0.451114
Target:  5'- gGCC-AUCG-CGCAGGUGCcgGGCGGUGCc -3'
miRNA:   3'- -CGGcUGGCgGCGUCCACG--CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 31666 0.73 0.468506
Target:  5'- cGCCGACCacccgGCgGUcccaagcgaAGGUGCGuCGGUGCc -3'
miRNA:   3'- -CGGCUGG-----CGgCG---------UCCACGCuGCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.