miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 48450 0.74 0.393197
Target:  5'- aCCGuACCcagGCUGCAGGagGUGACGGUGCc -3'
miRNA:   3'- cGGC-UGG---CGGCGUCCa-CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 127988 0.74 0.377558
Target:  5'- cCCGGCCGCCGCGGGUcacCGA-GGUGg -3'
miRNA:   3'- cGGCUGGCGGCGUCCAc--GCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 162400 0.75 0.362342
Target:  5'- aCCGGCaucucgaaCGCCGUAcGGUGCGACGG-ACg -3'
miRNA:   3'- cGGCUG--------GCGGCGU-CCACGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 52657 0.75 0.354895
Target:  5'- cUUGGCCGCCGCuGGcgGUGGCGGUGg -3'
miRNA:   3'- cGGCUGGCGGCGuCCa-CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 123875 0.75 0.354895
Target:  5'- uCCGcACgCGCCGCAGGUGCG-CcGUGCa -3'
miRNA:   3'- cGGC-UG-GCGGCGUCCACGCuGcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 99861 0.71 0.541176
Target:  5'- cCCGAUCGCCGCc-GUGCGAgGGg-- -3'
miRNA:   3'- cGGCUGGCGGCGucCACGCUgCCaug -5'
15938 5' -60.3 NC_004065.1 + 163975 0.71 0.550547
Target:  5'- cGCUGuCCGCCGUca--GCGAUGGUGCg -3'
miRNA:   3'- -CGGCuGGCGGCGuccaCGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 125603 0.69 0.69101
Target:  5'- gGCCGugCGCgGCGGGU-CGAUGcgcgccugguagaaGUGCa -3'
miRNA:   3'- -CGGCugGCGgCGUCCAcGCUGC--------------CAUG- -5'
15938 5' -60.3 NC_004065.1 + 229655 0.69 0.684359
Target:  5'- gGCCGGCgGCagugGCAGGUggGCGuCGGgGCg -3'
miRNA:   3'- -CGGCUGgCGg---CGUCCA--CGCuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 74831 0.69 0.655675
Target:  5'- cGCCcgggucggGACCGaggggCGCAGGUugagGCGGCGGUGg -3'
miRNA:   3'- -CGG--------CUGGCg----GCGUCCA----CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 56702 0.69 0.654715
Target:  5'- -aCGAcucuucuCCGCCGCAGcGgcgGCGGCGGcgGCa -3'
miRNA:   3'- cgGCU-------GGCGGCGUC-Ca--CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 47321 0.7 0.636457
Target:  5'- gGCCGAuCCGCgGCGGGggGCaACGGa-- -3'
miRNA:   3'- -CGGCU-GGCGgCGUCCa-CGcUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 60339 0.7 0.636457
Target:  5'- uGCCGG-CGCCGUAcgcguuGGUGCGcACGGUc- -3'
miRNA:   3'- -CGGCUgGCGGCGU------CCACGC-UGCCAug -5'
15938 5' -60.3 NC_004065.1 + 99953 0.7 0.62684
Target:  5'- cGCCGuagucgaccACCGCCGCGGcGUGCu-CGGgccGCg -3'
miRNA:   3'- -CGGC---------UGGCGGCGUC-CACGcuGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 18130 0.7 0.62684
Target:  5'- uCCGGgcCCGCCGCGGGacgggaUGuUGGCGGUAUc -3'
miRNA:   3'- cGGCU--GGCGGCGUCC------AC-GCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 187990 0.7 0.623955
Target:  5'- -gCGGCCGCgCGCaacauggcucgcggAGGUccGCGACGGUAg -3'
miRNA:   3'- cgGCUGGCG-GCG--------------UCCA--CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 17260 0.7 0.623955
Target:  5'- cGUCGAccuccucuucuucaCCGCCGgaggugguguCGGGUGCGGCGGagACa -3'
miRNA:   3'- -CGGCU--------------GGCGGC----------GUCCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 97016 0.7 0.617227
Target:  5'- uGCCGcugcugcuACUGUCGUGGGUGCuGCGcGUGCg -3'
miRNA:   3'- -CGGC--------UGGCGGCGUCCACGcUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 116831 0.7 0.617227
Target:  5'- aGCgUGGCCGUgaUGguGGUGCaGugGGUGCc -3'
miRNA:   3'- -CG-GCUGGCG--GCguCCACG-CugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 66607 0.71 0.569431
Target:  5'- cGCgGACaggauccggaGCCGCGGGcUGCGGCGcUGCg -3'
miRNA:   3'- -CGgCUGg---------CGGCGUCC-ACGCUGCcAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.