miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 141354 0.77 0.268053
Target:  5'- cGUCGuCCGCuCGCGGGUGCuGGCGGcGCu -3'
miRNA:   3'- -CGGCuGGCG-GCGUCCACG-CUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 104677 0.71 0.551487
Target:  5'- cGCCGGagggucacgaggcgaCGCUGCAGGUGCuGCGGg-- -3'
miRNA:   3'- -CGGCUg--------------GCGGCGUCCACGcUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 31476 0.71 0.559967
Target:  5'- uCCGuGCCGCgCGCGgaccuGGUGCGGCugaGGUACa -3'
miRNA:   3'- cGGC-UGGCG-GCGU-----CCACGCUG---CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 109480 0.66 0.857033
Target:  5'- cGCCGACCGCCGCcGGcacacCGGa-- -3'
miRNA:   3'- -CGGCUGGCGGCGuCCacgcuGCCaug -5'
15938 5' -60.3 NC_004065.1 + 115562 0.74 0.393197
Target:  5'- cGCC-ACCGCCGCGauGGUGagaCGGCGGUGg -3'
miRNA:   3'- -CGGcUGGCGGCGU--CCAC---GCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 173315 0.74 0.409252
Target:  5'- cGCCG-CCGCCGCcGcUGCGGCGGa-- -3'
miRNA:   3'- -CGGCuGGCGGCGuCcACGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 207117 0.73 0.433241
Target:  5'- cGCCGACCGCCGCcacugaccgcguuGGGaggcUGCGACagcagcGUGCu -3'
miRNA:   3'- -CGGCUGGCGGCG-------------UCC----ACGCUGc-----CAUG- -5'
15938 5' -60.3 NC_004065.1 + 102903 0.73 0.439153
Target:  5'- cGCCG-CCGCCGCgauGGGggagaacuggacgGCGACGGaGCu -3'
miRNA:   3'- -CGGCuGGCGGCG---UCCa------------CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 105426 0.73 0.468506
Target:  5'- uGCUGGCCGCgcuggUGCGGGacgugGCGACGG-ACg -3'
miRNA:   3'- -CGGCUGGCG-----GCGUCCa----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 107505 0.71 0.550547
Target:  5'- cGCuCGACCGCuCGCacgaggAGGUGCGcGCGGcgACc -3'
miRNA:   3'- -CG-GCUGGCG-GCG------UCCACGC-UGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 88921 0.72 0.513404
Target:  5'- cGUCGGCgaUGCCGCugaAGGcGCGGCGGUAg -3'
miRNA:   3'- -CGGCUG--GCGGCG---UCCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 205513 0.73 0.451114
Target:  5'- cGCCGccaucuugggGCCGgCGCucAGGgccgGCGGCGGUGCc -3'
miRNA:   3'- -CGGC----------UGGCgGCG--UCCa---CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 167412 0.75 0.333209
Target:  5'- uGCCGcggcugcuGCCGCCgGCGGGgGCGGCGGcGCu -3'
miRNA:   3'- -CGGC--------UGGCGG-CGUCCaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 153464 0.71 0.541176
Target:  5'- cGCCGcuuuuCUGCgGCauguguacgggGGGUGCGACaGGUGCg -3'
miRNA:   3'- -CGGCu----GGCGgCG-----------UCCACGCUG-CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 148850 0.75 0.354895
Target:  5'- aGgCGGCCGCCGCgaucgaggAGGcgGCGGCGGgggGCg -3'
miRNA:   3'- -CgGCUGGCGGCG--------UCCa-CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 154253 0.73 0.450254
Target:  5'- cGCCGACCGCCGCcuccgccucccccGGGUcaGCGcUGGgGCa -3'
miRNA:   3'- -CGGCUGGCGGCG-------------UCCA--CGCuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 59752 0.71 0.550547
Target:  5'- uGCCGACCGCguggccgaUGguGGcgGCGGCGGccACg -3'
miRNA:   3'- -CGGCUGGCG--------GCguCCa-CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 31708 0.71 0.559023
Target:  5'- gGCCGuuCCGCgGCAuGUGCGaccccgaguucaaGCGGUGCu -3'
miRNA:   3'- -CGGCu-GGCGgCGUcCACGC-------------UGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 99939 0.75 0.362342
Target:  5'- cGCCgGACCGCCGCg---GCGGCGGcUGCu -3'
miRNA:   3'- -CGG-CUGGCGGCGuccaCGCUGCC-AUG- -5'
15938 5' -60.3 NC_004065.1 + 181935 0.73 0.425708
Target:  5'- cGCCG-CCGCCaCAGGUccGCGAgGGUGa -3'
miRNA:   3'- -CGGCuGGCGGcGUCCA--CGCUgCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.