Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 222639 | 0.7 | 0.594208 |
Target: 5'- gGUCGGCCcuuuacauacucaCCGCAGGUGUGgGCGGUGa -3' miRNA: 3'- -CGGCUGGc------------GGCGUCCACGC-UGCCAUg -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 31476 | 0.71 | 0.559967 |
Target: 5'- uCCGuGCCGCgCGCGgaccuGGUGCGGCugaGGUACa -3' miRNA: 3'- cGGC-UGGCG-GCGU-----CCACGCUG---CCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 205513 | 0.73 | 0.451114 |
Target: 5'- cGCCGccaucuugggGCCGgCGCucAGGgccgGCGGCGGUGCc -3' miRNA: 3'- -CGGC----------UGGCgGCG--UCCa---CGCUGCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 99939 | 0.75 | 0.362342 |
Target: 5'- cGCCgGACCGCCGCg---GCGGCGGcUGCu -3' miRNA: 3'- -CGG-CUGGCGGCGuccaCGCUGCC-AUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 82795 | 0.69 | 0.674826 |
Target: 5'- cGCCGACCcauCCGgGGGUGgGGaaGUACu -3' miRNA: 3'- -CGGCUGGc--GGCgUCCACgCUgcCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 155808 | 0.7 | 0.62684 |
Target: 5'- cGCCGAUUaccaucacggGCU-CAGGUucGCGACGGUGCg -3' miRNA: 3'- -CGGCUGG----------CGGcGUCCA--CGCUGCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 104677 | 0.71 | 0.551487 |
Target: 5'- cGCCGGagggucacgaggcgaCGCUGCAGGUGCuGCGGg-- -3' miRNA: 3'- -CGGCUg--------------GCGGCGUCCACGcUGCCaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 148850 | 0.75 | 0.354895 |
Target: 5'- aGgCGGCCGCCGCgaucgaggAGGcgGCGGCGGgggGCg -3' miRNA: 3'- -CgGCUGGCGGCG--------UCCa-CGCUGCCa--UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 113142 | 0.7 | 0.617227 |
Target: 5'- aCCcACCGCCGCA--UGCgGugGGUGCa -3' miRNA: 3'- cGGcUGGCGGCGUccACG-CugCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 167412 | 0.75 | 0.333209 |
Target: 5'- uGCCGcggcugcuGCCGCCgGCGGGgGCGGCGGcGCu -3' miRNA: 3'- -CGGC--------UGGCGG-CGUCCaCGCUGCCaUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 31708 | 0.71 | 0.559023 |
Target: 5'- gGCCGuuCCGCgGCAuGUGCGaccccgaguucaaGCGGUGCu -3' miRNA: 3'- -CGGCu-GGCGgCGUcCACGC-------------UGCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 105642 | 0.7 | 0.598037 |
Target: 5'- uGCCGaaGCUGCUGCAGGaGUaccuGACGGUGa -3' miRNA: 3'- -CGGC--UGGCGGCGUCCaCG----CUGCCAUg -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 153464 | 0.71 | 0.541176 |
Target: 5'- cGCCGcuuuuCUGCgGCauguguacgggGGGUGCGACaGGUGCg -3' miRNA: 3'- -CGGCu----GGCGgCG-----------UCCACGCUG-CCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 105426 | 0.73 | 0.468506 |
Target: 5'- uGCUGGCCGCgcuggUGCGGGacgugGCGACGG-ACg -3' miRNA: 3'- -CGGCUGGCG-----GCGUCCa----CGCUGCCaUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 207117 | 0.73 | 0.433241 |
Target: 5'- cGCCGACCGCCGCcacugaccgcguuGGGaggcUGCGACagcagcGUGCu -3' miRNA: 3'- -CGGCUGGCGGCG-------------UCC----ACGCUGc-----CAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 115562 | 0.74 | 0.393197 |
Target: 5'- cGCC-ACCGCCGCGauGGUGagaCGGCGGUGg -3' miRNA: 3'- -CGGcUGGCGGCGU--CCAC---GCUGCCAUg -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 28844 | 0.68 | 0.7127 |
Target: 5'- aGCCggGACgCGCCGCuuGGUGuCGGCGcUGCu -3' miRNA: 3'- -CGG--CUG-GCGGCGu-CCAC-GCUGCcAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 130477 | 0.69 | 0.684359 |
Target: 5'- gGCCGuCCGCCGCGGcga-GACGGgaGCg -3' miRNA: 3'- -CGGCuGGCGGCGUCcacgCUGCCa-UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 141624 | 0.69 | 0.655675 |
Target: 5'- uGCCGGCgGUgGCGGcucgGCGACGGaggGCg -3' miRNA: 3'- -CGGCUGgCGgCGUCca--CGCUGCCa--UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 151370 | 0.7 | 0.627802 |
Target: 5'- cGCCGGCCGCUGCGcuGGcggccgaucucuuggGUGGCGGagGCg -3' miRNA: 3'- -CGGCUGGCGGCGU--CCa--------------CGCUGCCa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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