miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 7576 0.69 0.665262
Target:  5'- aUCGugCGUCGuCGGGUcCGGCGGUAa -3'
miRNA:   3'- cGGCugGCGGC-GUCCAcGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 104677 0.71 0.551487
Target:  5'- cGCCGGagggucacgaggcgaCGCUGCAGGUGCuGCGGg-- -3'
miRNA:   3'- -CGGCUg--------------GCGGCGUCCACGcUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 148850 0.75 0.354895
Target:  5'- aGgCGGCCGCCGCgaucgaggAGGcgGCGGCGGgggGCg -3'
miRNA:   3'- -CgGCUGGCGGCG--------UCCa-CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 77734 0.69 0.655675
Target:  5'- cGCCG-CCGCCGCAGGacuggGCGAgcuccucgaccUGGa-- -3'
miRNA:   3'- -CGGCuGGCGGCGUCCa----CGCU-----------GCCaug -5'
15938 5' -60.3 NC_004065.1 + 167412 0.75 0.333209
Target:  5'- uGCCGcggcugcuGCCGCCgGCGGGgGCGGCGGcGCu -3'
miRNA:   3'- -CGGC--------UGGCGG-CGUCCaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 105747 0.66 0.810387
Target:  5'- -aCGACUucCCGCAguaccagcGGUGCGACGGcgGCu -3'
miRNA:   3'- cgGCUGGc-GGCGU--------CCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 115562 0.74 0.393197
Target:  5'- cGCC-ACCGCCGCGauGGUGagaCGGCGGUGg -3'
miRNA:   3'- -CGGcUGGCGGCGU--CCAC---GCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 157101 0.67 0.793626
Target:  5'- cCCGACuCGCCGcCGGGgGCGccuucaGCGGggGCa -3'
miRNA:   3'- cGGCUG-GCGGC-GUCCaCGC------UGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 121416 0.67 0.792774
Target:  5'- cGCaGACC-CUGCAGGUacuggagGCGAUGcGUGCg -3'
miRNA:   3'- -CGgCUGGcGGCGUCCA-------CGCUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 116320 0.68 0.749604
Target:  5'- cGUCGGCgGCgGCAGcG-GCGACGGc-- -3'
miRNA:   3'- -CGGCUGgCGgCGUC-CaCGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 173032 0.68 0.731304
Target:  5'- cGuuGGCUGuuaCCGCuAGGUgGCGACGGaACa -3'
miRNA:   3'- -CggCUGGC---GGCG-UCCA-CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 28844 0.68 0.7127
Target:  5'- aGCCggGACgCGCCGCuuGGUGuCGGCGcUGCu -3'
miRNA:   3'- -CGG--CUG-GCGGCGu-CCAC-GCUGCcAUG- -5'
15938 5' -60.3 NC_004065.1 + 130477 0.69 0.684359
Target:  5'- gGCCGuCCGCCGCGGcga-GACGGgaGCg -3'
miRNA:   3'- -CGGCuGGCGGCGUCcacgCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 161409 0.69 0.646071
Target:  5'- cGCCaGCUGCuCGCuguccAGGUGCGACGuGUcgGCg -3'
miRNA:   3'- -CGGcUGGCG-GCG-----UCCACGCUGC-CA--UG- -5'
15938 5' -60.3 NC_004065.1 + 113142 0.7 0.617227
Target:  5'- aCCcACCGCCGCA--UGCgGugGGUGCa -3'
miRNA:   3'- cGGcUGGCGGCGUccACG-CugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 222639 0.7 0.594208
Target:  5'- gGUCGGCCcuuuacauacucaCCGCAGGUGUGgGCGGUGa -3'
miRNA:   3'- -CGGCUGGc------------GGCGUCCACGC-UGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 31476 0.71 0.559967
Target:  5'- uCCGuGCCGCgCGCGgaccuGGUGCGGCugaGGUACa -3'
miRNA:   3'- cGGC-UGGCG-GCGU-----CCACGCUG---CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 153464 0.71 0.541176
Target:  5'- cGCCGcuuuuCUGCgGCauguguacgggGGGUGCGACaGGUGCg -3'
miRNA:   3'- -CGGCu----GGCGgCG-----------UCCACGCUG-CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 105426 0.73 0.468506
Target:  5'- uGCUGGCCGCgcuggUGCGGGacgugGCGACGG-ACg -3'
miRNA:   3'- -CGGCUGGCG-----GCGUCCa----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 207117 0.73 0.433241
Target:  5'- cGCCGACCGCCGCcacugaccgcguuGGGaggcUGCGACagcagcGUGCu -3'
miRNA:   3'- -CGGCUGGCGGCG-------------UCC----ACGCUGc-----CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.