miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 114871 0.66 0.91908
Target:  5'- aCgACGGUgCCGCcggCCGGCgguuCCgAGGCCAu -3'
miRNA:   3'- -GgUGCCA-GGCG---GGCUGau--GG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 199406 0.66 0.91908
Target:  5'- cCCA-GGUgCCGCUCGACUcgucgaACC-GACCu -3'
miRNA:   3'- -GGUgCCA-GGCGGGCUGA------UGGuCUGGu -5'
15939 3' -58.6 NC_004065.1 + 69422 0.66 0.91908
Target:  5'- gCCA-GGUgCGCgCCGAcCUGCUGGACUc -3'
miRNA:   3'- -GGUgCCAgGCG-GGCU-GAUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 223274 0.66 0.915836
Target:  5'- aCCACGaGgaccgacccgagugCCGCCgCGGCUACCccGAUCGa -3'
miRNA:   3'- -GGUGC-Ca-------------GGCGG-GCUGAUGGu-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 198552 0.66 0.91363
Target:  5'- aCCA-GGUCCGCgCG-CgGCaCGGACCGc -3'
miRNA:   3'- -GGUgCCAGGCGgGCuGaUG-GUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 207418 0.66 0.91363
Target:  5'- aCAC-GUCCguGCUCGACUcGCCAGGCg- -3'
miRNA:   3'- gGUGcCAGG--CGGGCUGA-UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 93454 0.66 0.91363
Target:  5'- aCCGCaGGaCCagcucCCCGGCUACCGG-CCu -3'
miRNA:   3'- -GGUG-CCaGGc----GGGCUGAUGGUCuGGu -5'
15939 3' -58.6 NC_004065.1 + 170323 0.66 0.910258
Target:  5'- gCCGCGG-CCGCUCGGCgcccuucuacgacgACuCGGACg- -3'
miRNA:   3'- -GGUGCCaGGCGGGCUGa-------------UG-GUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 28567 0.66 0.907968
Target:  5'- cUCGCGGggagCGUCCGGCUcgagcccccACCcGACCAg -3'
miRNA:   3'- -GGUGCCag--GCGGGCUGA---------UGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 98770 0.66 0.907968
Target:  5'- gCGCGcagaacGUCCGCCgccacggaGACgACCAGACCc -3'
miRNA:   3'- gGUGC------CAGGCGGg-------CUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 62383 0.66 0.907968
Target:  5'- gUCACGG-CCGUcccgCCGACgagcaucccgUACCuGACCAc -3'
miRNA:   3'- -GGUGCCaGGCG----GGCUG----------AUGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 63029 0.66 0.906228
Target:  5'- aCCACGGagagCUGUCCGGCgcgcgaggcgacgaUcCCGGACCu -3'
miRNA:   3'- -GGUGCCa---GGCGGGCUG--------------AuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 173632 0.66 0.902096
Target:  5'- gCCAcucgcugauCGGagCGCuCCGACccUGCCGGACCc -3'
miRNA:   3'- -GGU---------GCCagGCG-GGCUG--AUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 67016 0.66 0.902096
Target:  5'- gUACGGgccCCGCgCgGGCaGCCAGugCAu -3'
miRNA:   3'- gGUGCCa--GGCG-GgCUGaUGGUCugGU- -5'
15939 3' -58.6 NC_004065.1 + 195256 0.66 0.902096
Target:  5'- aCCGCGG-CCgcgaucugGCCCGGCgggaaACUgaGGGCCAg -3'
miRNA:   3'- -GGUGCCaGG--------CGGGCUGa----UGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 83161 0.66 0.902096
Target:  5'- cCCGCGuUCaCGCgCCGAUgcagACCAGGCg- -3'
miRNA:   3'- -GGUGCcAG-GCG-GGCUGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 27335 0.66 0.896016
Target:  5'- gCGCGGaaCCGCCaugCGAcCUACCGauGACCAu -3'
miRNA:   3'- gGUGCCa-GGCGG---GCU-GAUGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 165116 0.66 0.896016
Target:  5'- -gGCGGcgucCCGCCCGGCgACUGGcGCCGc -3'
miRNA:   3'- ggUGCCa---GGCGGGCUGaUGGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 23725 0.66 0.896016
Target:  5'- gUCGCGGUCCGUCCGGuCcguCCGauccGAUCAc -3'
miRNA:   3'- -GGUGCCAGGCGGGCU-Gau-GGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 46763 0.66 0.896016
Target:  5'- uCCA-GGUCC-CCCGAC-ACCccgaacuucAGACCGu -3'
miRNA:   3'- -GGUgCCAGGcGGGCUGaUGG---------UCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.