miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 38858 0.67 0.86968
Target:  5'- gCCGCGGgaCGCCC-AUcGCCAGACUc -3'
miRNA:   3'- -GGUGCCagGCGGGcUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 16551 0.67 0.86261
Target:  5'- gUCGCGGcgaCCGCuCCGACUACaccuCAGcCCGa -3'
miRNA:   3'- -GGUGCCa--GGCG-GGCUGAUG----GUCuGGU- -5'
15939 3' -58.6 NC_004065.1 + 138948 0.67 0.883245
Target:  5'- uCCugGGgccagucgCUGCgCGuCUGCgAGACCAg -3'
miRNA:   3'- -GGugCCa-------GGCGgGCuGAUGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 195114 0.67 0.87656
Target:  5'- uCCGCGa-CCGCaCCgGGCUgucuacuuuccGCCAGGCCAg -3'
miRNA:   3'- -GGUGCcaGGCG-GG-CUGA-----------UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 122126 0.67 0.87656
Target:  5'- aCGCGGgcugcucggagaUCaCGUCCGugauCUGCCGGAUCAu -3'
miRNA:   3'- gGUGCC------------AG-GCGGGCu---GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 194826 0.67 0.86968
Target:  5'- -gGCGGUggCCGCCaCGuuCU-CCAGGCCGa -3'
miRNA:   3'- ggUGCCA--GGCGG-GCu-GAuGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 117469 0.67 0.86968
Target:  5'- uCCGCGG-CCGCUCGccGCcACCGGugUu -3'
miRNA:   3'- -GGUGCCaGGCGGGC--UGaUGGUCugGu -5'
15939 3' -58.6 NC_004065.1 + 64649 0.66 0.896016
Target:  5'- aCCGCGcGUCCGCCguGCUgGCCgAGAUCu -3'
miRNA:   3'- -GGUGC-CAGGCGGgcUGA-UGG-UCUGGu -5'
15939 3' -58.6 NC_004065.1 + 67016 0.66 0.902096
Target:  5'- gUACGGgccCCGCgCgGGCaGCCAGugCAu -3'
miRNA:   3'- gGUGCCa--GGCG-GgCUGaUGGUCugGU- -5'
15939 3' -58.6 NC_004065.1 + 195256 0.66 0.902096
Target:  5'- aCCGCGG-CCgcgaucugGCCCGGCgggaaACUgaGGGCCAg -3'
miRNA:   3'- -GGUGCCaGG--------CGGGCUGa----UGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 63029 0.66 0.906228
Target:  5'- aCCACGGagagCUGUCCGGCgcgcgaggcgacgaUcCCGGACCu -3'
miRNA:   3'- -GGUGCCa---GGCGGGCUG--------------AuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 83161 0.66 0.902096
Target:  5'- cCCGCGuUCaCGCgCCGAUgcagACCAGGCg- -3'
miRNA:   3'- -GGUGCcAG-GCG-GGCUGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 23725 0.66 0.896016
Target:  5'- gUCGCGGUCCGUCCGGuCcguCCGauccGAUCAc -3'
miRNA:   3'- -GGUGCCAGGCGGGCU-Gau-GGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 93454 0.66 0.91363
Target:  5'- aCCGCaGGaCCagcucCCCGGCUACCGG-CCu -3'
miRNA:   3'- -GGUG-CCaGGc----GGGCUGAUGGUCuGGu -5'
15939 3' -58.6 NC_004065.1 + 207418 0.66 0.91363
Target:  5'- aCAC-GUCCguGCUCGACUcGCCAGGCg- -3'
miRNA:   3'- gGUGcCAGG--CGGGCUGA-UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 198552 0.66 0.91363
Target:  5'- aCCA-GGUCCGCgCG-CgGCaCGGACCGc -3'
miRNA:   3'- -GGUgCCAGGCGgGCuGaUG-GUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 223274 0.66 0.915836
Target:  5'- aCCACGaGgaccgacccgagugCCGCCgCGGCUACCccGAUCGa -3'
miRNA:   3'- -GGUGC-Ca-------------GGCGG-GCUGAUGGu-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 69422 0.66 0.91908
Target:  5'- gCCA-GGUgCGCgCCGAcCUGCUGGACUc -3'
miRNA:   3'- -GGUgCCAgGCG-GGCU-GAUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 199406 0.66 0.91908
Target:  5'- cCCA-GGUgCCGCUCGACUcgucgaACC-GACCu -3'
miRNA:   3'- -GGUgCCA-GGCGGGCUGA------UGGuCUGGu -5'
15939 3' -58.6 NC_004065.1 + 114871 0.66 0.91908
Target:  5'- aCgACGGUgCCGCcggCCGGCgguuCCgAGGCCAu -3'
miRNA:   3'- -GgUGCCA-GGCG---GGCUGau--GG-UCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.