miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 8039 1.1 0.002509
Target:  5'- aCCACGGUCCGCCCGACUACCAGACCAa -3'
miRNA:   3'- -GGUGCCAGGCGGGCUGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 8099 0.87 0.085571
Target:  5'- aCCACGGUCCGCCCGACUACaaaACCc -3'
miRNA:   3'- -GGUGCCAGGCGGGCUGAUGgucUGGu -5'
15939 3' -58.6 NC_004065.1 + 8069 0.85 0.112569
Target:  5'- aCCACGGUCaGUCCuACUACCAGACCAa -3'
miRNA:   3'- -GGUGCCAGgCGGGcUGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 8009 0.83 0.154675
Target:  5'- aCCACaGUCCGUCCuACUACCAGACCc -3'
miRNA:   3'- -GGUGcCAGGCGGGcUGAUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 93510 0.75 0.421877
Target:  5'- aCCcCGGacCCGCCUGGCUucCCGGACCAg -3'
miRNA:   3'- -GGuGCCa-GGCGGGCUGAu-GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 207990 0.74 0.473503
Target:  5'- aCCGCGGcCUGCCCGGg-GCCGuGGCCGg -3'
miRNA:   3'- -GGUGCCaGGCGGGCUgaUGGU-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 125991 0.74 0.50048
Target:  5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3'
miRNA:   3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5'
15939 3' -58.6 NC_004065.1 + 198563 0.74 0.518836
Target:  5'- gCCGCGGUCUcCCUGGCUACC--GCCGu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 45940 0.73 0.546848
Target:  5'- gCCGCGGUCCGUCCuGCU-CUGGGCUc -3'
miRNA:   3'- -GGUGCCAGGCGGGcUGAuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 165161 0.72 0.594495
Target:  5'- gCCGCGGUCCGCaggaUGGCgaacACCAcGCCGg -3'
miRNA:   3'- -GGUGCCAGGCGg---GCUGa---UGGUcUGGU- -5'
15939 3' -58.6 NC_004065.1 + 187850 0.72 0.604121
Target:  5'- aCACaagaGUCUGUCCGACcACCAGGCCc -3'
miRNA:   3'- gGUGc---CAGGCGGGCUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 124075 0.72 0.613765
Target:  5'- aCCACGGUCagcgcgaaGCCCGGgUG-CAGGCCc -3'
miRNA:   3'- -GGUGCCAGg-------CGGGCUgAUgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 53803 0.72 0.613765
Target:  5'- gCGCGGUCCG-CCGAgaGCCGGugaACCGu -3'
miRNA:   3'- gGUGCCAGGCgGGCUgaUGGUC---UGGU- -5'
15939 3' -58.6 NC_004065.1 + 109233 0.71 0.661078
Target:  5'- gCCGCuGUaCCGUCCGggguugaGCUGCCAGAUCGu -3'
miRNA:   3'- -GGUGcCA-GGCGGGC-------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 49708 0.71 0.67166
Target:  5'- aCgGCGGUCCucuccaugauGCCCGGCgagaguUCGGACCGg -3'
miRNA:   3'- -GgUGCCAGG----------CGGGCUGau----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 36092 0.7 0.690804
Target:  5'- gCCACcucuGGUCCGCgCGACUcagGCgGGAUCGa -3'
miRNA:   3'- -GGUG----CCAGGCGgGCUGA---UGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 855 0.7 0.719173
Target:  5'- aCGCGGagCGCauGACUGCCGGGCgAg -3'
miRNA:   3'- gGUGCCagGCGggCUGAUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 133064 0.7 0.719173
Target:  5'- cCCACGGUUCcCUCGGCgaGCUGGACCu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGa-UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 140198 0.7 0.722916
Target:  5'- gCCACGGccuucUCC-CCCGuccugucguuccaguAUUACCGGACCAu -3'
miRNA:   3'- -GGUGCC-----AGGcGGGC---------------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 130472 0.7 0.728507
Target:  5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3'
miRNA:   3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.