miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 23678 0.69 0.746945
Target:  5'- aCACGGUuccCCGUCCGuACcgagGCCAGACa- -3'
miRNA:   3'- gGUGCCA---GGCGGGC-UGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 64320 0.69 0.746945
Target:  5'- aCAgGGUCUGCUgGACU--CGGACCAg -3'
miRNA:   3'- gGUgCCAGGCGGgCUGAugGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 149713 0.69 0.756033
Target:  5'- gCCGCGG-CCGCgCCGGCccUCGGACUc -3'
miRNA:   3'- -GGUGCCaGGCG-GGCUGauGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 92448 0.69 0.756033
Target:  5'- gCCAUGGUuacaugucCCGCCuuccgCGGCgaugUGCCGGGCCAg -3'
miRNA:   3'- -GGUGCCA--------GGCGG-----GCUG----AUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113611 0.69 0.756033
Target:  5'- cCCGCGGUcCCGCCaaggGGCUggaAgCGGACCc -3'
miRNA:   3'- -GGUGCCA-GGCGGg---CUGA---UgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 229761 0.69 0.756033
Target:  5'- cCCGCGGUagucgUGCCgGACaGCCGGACgAa -3'
miRNA:   3'- -GGUGCCAg----GCGGgCUGaUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 25898 0.69 0.756033
Target:  5'- aUCACGGc---CCCGGCggGCCAGGCCAu -3'
miRNA:   3'- -GGUGCCaggcGGGCUGa-UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 90633 0.69 0.765024
Target:  5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3'
miRNA:   3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 202326 0.69 0.765024
Target:  5'- cUCuCGGUCCGCCgGGCggAUCAGAgCCu -3'
miRNA:   3'- -GGuGCCAGGCGGgCUGa-UGGUCU-GGu -5'
15939 3' -58.6 NC_004065.1 + 223859 0.69 0.773909
Target:  5'- aCuCGG-CCGCCCGGCccgGCCAucucGGCCGg -3'
miRNA:   3'- gGuGCCaGGCGGGCUGa--UGGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 80329 0.69 0.773909
Target:  5'- gCCGCGGcCC-CCCGGCguucgACCugcAGACCc -3'
miRNA:   3'- -GGUGCCaGGcGGGCUGa----UGG---UCUGGu -5'
15939 3' -58.6 NC_004065.1 + 110405 0.69 0.77831
Target:  5'- gCCACGGccgacggcgucuccUCCGCcgCCGGCguccugcacguCCAGGCCAg -3'
miRNA:   3'- -GGUGCC--------------AGGCG--GGCUGau---------GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 26901 0.69 0.782681
Target:  5'- uCCAgaGG-CCGCUCGACcgcacGCCGGACCc -3'
miRNA:   3'- -GGUg-CCaGGCGGGCUGa----UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 61391 0.69 0.791333
Target:  5'- gCCGCgccGGcUCCGCCCGcgGC-ACCAGcGCCAg -3'
miRNA:   3'- -GGUG---CC-AGGCGGGC--UGaUGGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 103746 0.69 0.791333
Target:  5'- gCGuCGGUUCGCgCGGCggggccuCCGGACCGu -3'
miRNA:   3'- gGU-GCCAGGCGgGCUGau-----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 18680 0.68 0.799857
Target:  5'- gCACGaGUCCGCCuCGGuCgGCuCAGGCCu -3'
miRNA:   3'- gGUGC-CAGGCGG-GCU-GaUG-GUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 158713 0.68 0.799857
Target:  5'- -aAUGGUCugcgCGCCCGACgugcgACCAGcgcgGCCAu -3'
miRNA:   3'- ggUGCCAG----GCGGGCUGa----UGGUC----UGGU- -5'
15939 3' -58.6 NC_004065.1 + 34007 0.68 0.808246
Target:  5'- aCUGCGGaUCUcgguggccuuGCCCGACUcCCuGGACCAg -3'
miRNA:   3'- -GGUGCC-AGG----------CGGGCUGAuGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 118168 0.68 0.808246
Target:  5'- aCCGCGGcggcggCCGUCaCGGCUGCC--GCCGu -3'
miRNA:   3'- -GGUGCCa-----GGCGG-GCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 24579 0.68 0.808246
Target:  5'- gCGCGGUCCGCgCGugUcgucGCC--GCCAc -3'
miRNA:   3'- gGUGCCAGGCGgGCugA----UGGucUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.