Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 114219 | 0.68 | 0.816492 |
Target: 5'- cUCACGGUCUGacaCCGGCcgcaguuuccgUGCCcgGGACCGc -3' miRNA: 3'- -GGUGCCAGGCg--GGCUG-----------AUGG--UCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 34247 | 0.68 | 0.824589 |
Target: 5'- cCCGCGGUCCGCCauggucagcgCGACa--CGGcGCCGu -3' miRNA: 3'- -GGUGCCAGGCGG----------GCUGaugGUC-UGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 101393 | 0.68 | 0.824589 |
Target: 5'- aCgGCGGUCC-CCUGACcuccGCCAacGACCGu -3' miRNA: 3'- -GgUGCCAGGcGGGCUGa---UGGU--CUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 120243 | 0.68 | 0.824589 |
Target: 5'- cCCGCGGcguagCGCCUGccCUGCUGGACCGg -3' miRNA: 3'- -GGUGCCag---GCGGGCu-GAUGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 109628 | 0.68 | 0.831744 |
Target: 5'- aCGCGGcgaaggagcagcgUCCGCCCGAUccGCCGGAg-- -3' miRNA: 3'- gGUGCC-------------AGGCGGGCUGa-UGGUCUggu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 117177 | 0.68 | 0.832531 |
Target: 5'- aCGgGGUCCGCCCcuggggcaGGCguugcGCCAGGCa- -3' miRNA: 3'- gGUgCCAGGCGGG--------CUGa----UGGUCUGgu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 97661 | 0.68 | 0.840309 |
Target: 5'- gCgACGGcCUGCCCGuGCUACCGccuccacaagccGACCu -3' miRNA: 3'- -GgUGCCaGGCGGGC-UGAUGGU------------CUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 111787 | 0.68 | 0.840309 |
Target: 5'- uCCACGcGUCCGUCgaCGGCU-CCGauGACCGc -3' miRNA: 3'- -GGUGC-CAGGCGG--GCUGAuGGU--CUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 32668 | 0.67 | 0.847166 |
Target: 5'- cCCGCGGcggagaaUCgGCCCGuuuuuCU-CUAGACCAu -3' miRNA: 3'- -GGUGCC-------AGgCGGGCu----GAuGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 211994 | 0.67 | 0.847919 |
Target: 5'- cUCGCGca--GCCCGACgaACCAGACCu -3' miRNA: 3'- -GGUGCcaggCGGGCUGa-UGGUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 113490 | 0.67 | 0.854619 |
Target: 5'- uCCACGGUCgGCaCCGuacguCUcuuugacGCCgAGGCCGg -3' miRNA: 3'- -GGUGCCAGgCG-GGCu----GA-------UGG-UCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 205274 | 0.67 | 0.855355 |
Target: 5'- gCCaACGGggggCCGCCCaACgagugcGCCAGACUc -3' miRNA: 3'- -GG-UGCCa---GGCGGGcUGa-----UGGUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 99552 | 0.67 | 0.855355 |
Target: 5'- uCCAUGGUgCCGUCCGGC-GCCAu-CCu -3' miRNA: 3'- -GGUGCCA-GGCGGGCUGaUGGUcuGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 34365 | 0.67 | 0.86261 |
Target: 5'- gCCACccuccgCCGCUCGGCUGCCGGGa-- -3' miRNA: 3'- -GGUGcca---GGCGGGCUGAUGGUCUggu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 16551 | 0.67 | 0.86261 |
Target: 5'- gUCGCGGcgaCCGCuCCGACUACaccuCAGcCCGa -3' miRNA: 3'- -GGUGCCa--GGCG-GGCUGAUG----GUCuGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 91234 | 0.67 | 0.86261 |
Target: 5'- uCUGCGGUCCGCagaaCaGCaGCCAGAgCAc -3' miRNA: 3'- -GGUGCCAGGCGg---GcUGaUGGUCUgGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 137490 | 0.67 | 0.868981 |
Target: 5'- gCGCGcGcCCGCCCGcccguacgcgcgcGCgaggcACCGGGCCAa -3' miRNA: 3'- gGUGC-CaGGCGGGC-------------UGa----UGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 38858 | 0.67 | 0.86968 |
Target: 5'- gCCGCGGgaCGCCC-AUcGCCAGACUc -3' miRNA: 3'- -GGUGCCagGCGGGcUGaUGGUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 117469 | 0.67 | 0.86968 |
Target: 5'- uCCGCGG-CCGCUCGccGCcACCGGugUu -3' miRNA: 3'- -GGUGCCaGGCGGGC--UGaUGGUCugGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 194826 | 0.67 | 0.86968 |
Target: 5'- -gGCGGUggCCGCCaCGuuCU-CCAGGCCGa -3' miRNA: 3'- ggUGCCA--GGCGG-GCu-GAuGGUCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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