miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 23725 0.66 0.896016
Target:  5'- gUCGCGGUCCGUCCGGuCcguCCGauccGAUCAc -3'
miRNA:   3'- -GGUGCCAGGCGGGCU-Gau-GGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 46763 0.66 0.896016
Target:  5'- uCCA-GGUCC-CCCGAC-ACCccgaacuucAGACCGu -3'
miRNA:   3'- -GGUgCCAGGcGGGCUGaUGG---------UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 186179 0.66 0.889732
Target:  5'- uCCACGGcgucuccgcUCUGUCCGGCcAgCuGACCAa -3'
miRNA:   3'- -GGUGCC---------AGGCGGGCUGaUgGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 192393 0.66 0.889732
Target:  5'- gUCACGGUgaUCGCUCGGgaUACCAGAUUc -3'
miRNA:   3'- -GGUGCCA--GGCGGGCUg-AUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 222579 0.66 0.889732
Target:  5'- cCCAaGGUCuccuCGCCCG-CUGCCAcgauGGCCu -3'
miRNA:   3'- -GGUgCCAG----GCGGGCuGAUGGU----CUGGu -5'
15939 3' -58.6 NC_004065.1 + 158059 0.66 0.887807
Target:  5'- gCCucCGGgCUGCCCGGCUccaccggcggcgucGCCuccGACCAg -3'
miRNA:   3'- -GGu-GCCaGGCGGGCUGA--------------UGGu--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 138948 0.67 0.883245
Target:  5'- uCCugGGgccagucgCUGCgCGuCUGCgAGACCAg -3'
miRNA:   3'- -GGugCCa-------GGCGgGCuGAUGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109889 0.67 0.883245
Target:  5'- gCCGCGG-CCGCgucggggggucCCGGCUcguccGCCGcGGCCGc -3'
miRNA:   3'- -GGUGCCaGGCG-----------GGCUGA-----UGGU-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109814 0.67 0.87656
Target:  5'- gCGCGGUCCGCCCaagaaGAUcGgCAGGgCGa -3'
miRNA:   3'- gGUGCCAGGCGGG-----CUGaUgGUCUgGU- -5'
15939 3' -58.6 NC_004065.1 + 195114 0.67 0.87656
Target:  5'- uCCGCGa-CCGCaCCgGGCUgucuacuuuccGCCAGGCCAg -3'
miRNA:   3'- -GGUGCcaGGCG-GG-CUGA-----------UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 122126 0.67 0.87656
Target:  5'- aCGCGGgcugcucggagaUCaCGUCCGugauCUGCCGGAUCAu -3'
miRNA:   3'- gGUGCC------------AG-GCGGGCu---GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 117469 0.67 0.86968
Target:  5'- uCCGCGG-CCGCUCGccGCcACCGGugUu -3'
miRNA:   3'- -GGUGCCaGGCGGGC--UGaUGGUCugGu -5'
15939 3' -58.6 NC_004065.1 + 38858 0.67 0.86968
Target:  5'- gCCGCGGgaCGCCC-AUcGCCAGACUc -3'
miRNA:   3'- -GGUGCCagGCGGGcUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 207955 0.67 0.86968
Target:  5'- gCGCGGguugggCCGCCgCGACcgACCGGAg-- -3'
miRNA:   3'- gGUGCCa-----GGCGG-GCUGa-UGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 164066 0.67 0.86968
Target:  5'- cCCGaGGUCCGUCUGGCUcACgUAGugCAg -3'
miRNA:   3'- -GGUgCCAGGCGGGCUGA-UG-GUCugGU- -5'
15939 3' -58.6 NC_004065.1 + 194826 0.67 0.86968
Target:  5'- -gGCGGUggCCGCCaCGuuCU-CCAGGCCGa -3'
miRNA:   3'- ggUGCCA--GGCGG-GCu-GAuGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 137490 0.67 0.868981
Target:  5'- gCGCGcGcCCGCCCGcccguacgcgcgcGCgaggcACCGGGCCAa -3'
miRNA:   3'- gGUGC-CaGGCGGGC-------------UGa----UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 16551 0.67 0.86261
Target:  5'- gUCGCGGcgaCCGCuCCGACUACaccuCAGcCCGa -3'
miRNA:   3'- -GGUGCCa--GGCG-GGCUGAUG----GUCuGGU- -5'
15939 3' -58.6 NC_004065.1 + 34365 0.67 0.86261
Target:  5'- gCCACccuccgCCGCUCGGCUGCCGGGa-- -3'
miRNA:   3'- -GGUGcca---GGCGGGCUGAUGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 91234 0.67 0.86261
Target:  5'- uCUGCGGUCCGCagaaCaGCaGCCAGAgCAc -3'
miRNA:   3'- -GGUGCCAGGCGg---GcUGaUGGUCUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.