miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 99552 0.67 0.855355
Target:  5'- uCCAUGGUgCCGUCCGGC-GCCAu-CCu -3'
miRNA:   3'- -GGUGCCA-GGCGGGCUGaUGGUcuGGu -5'
15939 3' -58.6 NC_004065.1 + 205274 0.67 0.855355
Target:  5'- gCCaACGGggggCCGCCCaACgagugcGCCAGACUc -3'
miRNA:   3'- -GG-UGCCa---GGCGGGcUGa-----UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 113490 0.67 0.854619
Target:  5'- uCCACGGUCgGCaCCGuacguCUcuuugacGCCgAGGCCGg -3'
miRNA:   3'- -GGUGCCAGgCG-GGCu----GA-------UGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 211994 0.67 0.847919
Target:  5'- cUCGCGca--GCCCGACgaACCAGACCu -3'
miRNA:   3'- -GGUGCcaggCGGGCUGa-UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 32668 0.67 0.847166
Target:  5'- cCCGCGGcggagaaUCgGCCCGuuuuuCU-CUAGACCAu -3'
miRNA:   3'- -GGUGCC-------AGgCGGGCu----GAuGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 97661 0.68 0.840309
Target:  5'- gCgACGGcCUGCCCGuGCUACCGccuccacaagccGACCu -3'
miRNA:   3'- -GgUGCCaGGCGGGC-UGAUGGU------------CUGGu -5'
15939 3' -58.6 NC_004065.1 + 111787 0.68 0.840309
Target:  5'- uCCACGcGUCCGUCgaCGGCU-CCGauGACCGc -3'
miRNA:   3'- -GGUGC-CAGGCGG--GCUGAuGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 117177 0.68 0.832531
Target:  5'- aCGgGGUCCGCCCcuggggcaGGCguugcGCCAGGCa- -3'
miRNA:   3'- gGUgCCAGGCGGG--------CUGa----UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 109628 0.68 0.831744
Target:  5'- aCGCGGcgaaggagcagcgUCCGCCCGAUccGCCGGAg-- -3'
miRNA:   3'- gGUGCC-------------AGGCGGGCUGa-UGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 120243 0.68 0.824589
Target:  5'- cCCGCGGcguagCGCCUGccCUGCUGGACCGg -3'
miRNA:   3'- -GGUGCCag---GCGGGCu-GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 101393 0.68 0.824589
Target:  5'- aCgGCGGUCC-CCUGACcuccGCCAacGACCGu -3'
miRNA:   3'- -GgUGCCAGGcGGGCUGa---UGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34247 0.68 0.824589
Target:  5'- cCCGCGGUCCGCCauggucagcgCGACa--CGGcGCCGu -3'
miRNA:   3'- -GGUGCCAGGCGG----------GCUGaugGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 114219 0.68 0.816492
Target:  5'- cUCACGGUCUGacaCCGGCcgcaguuuccgUGCCcgGGACCGc -3'
miRNA:   3'- -GGUGCCAGGCg--GGCUG-----------AUGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 118168 0.68 0.808246
Target:  5'- aCCGCGGcggcggCCGUCaCGGCUGCC--GCCGu -3'
miRNA:   3'- -GGUGCCa-----GGCGG-GCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34007 0.68 0.808246
Target:  5'- aCUGCGGaUCUcgguggccuuGCCCGACUcCCuGGACCAg -3'
miRNA:   3'- -GGUGCC-AGG----------CGGGCUGAuGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 24579 0.68 0.808246
Target:  5'- gCGCGGUCCGCgCGugUcgucGCC--GCCAc -3'
miRNA:   3'- gGUGCCAGGCGgGCugA----UGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 18680 0.68 0.799857
Target:  5'- gCACGaGUCCGCCuCGGuCgGCuCAGGCCu -3'
miRNA:   3'- gGUGC-CAGGCGG-GCU-GaUG-GUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 158713 0.68 0.799857
Target:  5'- -aAUGGUCugcgCGCCCGACgugcgACCAGcgcgGCCAu -3'
miRNA:   3'- ggUGCCAG----GCGGGCUGa----UGGUC----UGGU- -5'
15939 3' -58.6 NC_004065.1 + 103746 0.69 0.791333
Target:  5'- gCGuCGGUUCGCgCGGCggggccuCCGGACCGu -3'
miRNA:   3'- gGU-GCCAGGCGgGCUGau-----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 61391 0.69 0.791333
Target:  5'- gCCGCgccGGcUCCGCCCGcgGC-ACCAGcGCCAg -3'
miRNA:   3'- -GGUG---CC-AGGCGGGC--UGaUGGUC-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.