miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 26901 0.69 0.782681
Target:  5'- uCCAgaGG-CCGCUCGACcgcacGCCGGACCc -3'
miRNA:   3'- -GGUg-CCaGGCGGGCUGa----UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 110405 0.69 0.77831
Target:  5'- gCCACGGccgacggcgucuccUCCGCcgCCGGCguccugcacguCCAGGCCAg -3'
miRNA:   3'- -GGUGCC--------------AGGCG--GGCUGau---------GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 223859 0.69 0.773909
Target:  5'- aCuCGG-CCGCCCGGCccgGCCAucucGGCCGg -3'
miRNA:   3'- gGuGCCaGGCGGGCUGa--UGGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 80329 0.69 0.773909
Target:  5'- gCCGCGGcCC-CCCGGCguucgACCugcAGACCc -3'
miRNA:   3'- -GGUGCCaGGcGGGCUGa----UGG---UCUGGu -5'
15939 3' -58.6 NC_004065.1 + 202326 0.69 0.765024
Target:  5'- cUCuCGGUCCGCCgGGCggAUCAGAgCCu -3'
miRNA:   3'- -GGuGCCAGGCGGgCUGa-UGGUCU-GGu -5'
15939 3' -58.6 NC_004065.1 + 90633 0.69 0.765024
Target:  5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3'
miRNA:   3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 25898 0.69 0.756033
Target:  5'- aUCACGGc---CCCGGCggGCCAGGCCAu -3'
miRNA:   3'- -GGUGCCaggcGGGCUGa-UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 149713 0.69 0.756033
Target:  5'- gCCGCGG-CCGCgCCGGCccUCGGACUc -3'
miRNA:   3'- -GGUGCCaGGCG-GGCUGauGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 92448 0.69 0.756033
Target:  5'- gCCAUGGUuacaugucCCGCCuuccgCGGCgaugUGCCGGGCCAg -3'
miRNA:   3'- -GGUGCCA--------GGCGG-----GCUG----AUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113611 0.69 0.756033
Target:  5'- cCCGCGGUcCCGCCaaggGGCUggaAgCGGACCc -3'
miRNA:   3'- -GGUGCCA-GGCGGg---CUGA---UgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 229761 0.69 0.756033
Target:  5'- cCCGCGGUagucgUGCCgGACaGCCGGACgAa -3'
miRNA:   3'- -GGUGCCAg----GCGGgCUGaUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 64320 0.69 0.746945
Target:  5'- aCAgGGUCUGCUgGACU--CGGACCAg -3'
miRNA:   3'- gGUgCCAGGCGGgCUGAugGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 23678 0.69 0.746945
Target:  5'- aCACGGUuccCCGUCCGuACcgagGCCAGACa- -3'
miRNA:   3'- gGUGCCA---GGCGGGC-UGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 130472 0.7 0.728507
Target:  5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3'
miRNA:   3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 140198 0.7 0.722916
Target:  5'- gCCACGGccuucUCC-CCCGuccugucguuccaguAUUACCGGACCAu -3'
miRNA:   3'- -GGUGCC-----AGGcGGGC---------------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 133064 0.7 0.719173
Target:  5'- cCCACGGUUCcCUCGGCgaGCUGGACCu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGa-UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 855 0.7 0.719173
Target:  5'- aCGCGGagCGCauGACUGCCGGGCgAg -3'
miRNA:   3'- gGUGCCagGCGggCUGAUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 36092 0.7 0.690804
Target:  5'- gCCACcucuGGUCCGCgCGACUcagGCgGGAUCGa -3'
miRNA:   3'- -GGUG----CCAGGCGgGCUGA---UGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 49708 0.71 0.67166
Target:  5'- aCgGCGGUCCucuccaugauGCCCGGCgagaguUCGGACCGg -3'
miRNA:   3'- -GgUGCCAGG----------CGGGCUGau----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109233 0.71 0.661078
Target:  5'- gCCGCuGUaCCGUCCGggguugaGCUGCCAGAUCGu -3'
miRNA:   3'- -GGUGcCA-GGCGGGC-------UGAUGGUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.