miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 855 0.7 0.719173
Target:  5'- aCGCGGagCGCauGACUGCCGGGCgAg -3'
miRNA:   3'- gGUGCCagGCGggCUGAUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 8009 0.83 0.154675
Target:  5'- aCCACaGUCCGUCCuACUACCAGACCc -3'
miRNA:   3'- -GGUGcCAGGCGGGcUGAUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 8039 1.1 0.002509
Target:  5'- aCCACGGUCCGCCCGACUACCAGACCAa -3'
miRNA:   3'- -GGUGCCAGGCGGGCUGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 8069 0.85 0.112569
Target:  5'- aCCACGGUCaGUCCuACUACCAGACCAa -3'
miRNA:   3'- -GGUGCCAGgCGGGcUGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 8099 0.87 0.085571
Target:  5'- aCCACGGUCCGCCCGACUACaaaACCc -3'
miRNA:   3'- -GGUGCCAGGCGGGCUGAUGgucUGGu -5'
15939 3' -58.6 NC_004065.1 + 16551 0.67 0.86261
Target:  5'- gUCGCGGcgaCCGCuCCGACUACaccuCAGcCCGa -3'
miRNA:   3'- -GGUGCCa--GGCG-GGCUGAUG----GUCuGGU- -5'
15939 3' -58.6 NC_004065.1 + 18680 0.68 0.799857
Target:  5'- gCACGaGUCCGCCuCGGuCgGCuCAGGCCu -3'
miRNA:   3'- gGUGC-CAGGCGG-GCU-GaUG-GUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 23678 0.69 0.746945
Target:  5'- aCACGGUuccCCGUCCGuACcgagGCCAGACa- -3'
miRNA:   3'- gGUGCCA---GGCGGGC-UGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 23725 0.66 0.896016
Target:  5'- gUCGCGGUCCGUCCGGuCcguCCGauccGAUCAc -3'
miRNA:   3'- -GGUGCCAGGCGGGCU-Gau-GGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 24579 0.68 0.808246
Target:  5'- gCGCGGUCCGCgCGugUcgucGCC--GCCAc -3'
miRNA:   3'- gGUGCCAGGCGgGCugA----UGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 25898 0.69 0.756033
Target:  5'- aUCACGGc---CCCGGCggGCCAGGCCAu -3'
miRNA:   3'- -GGUGCCaggcGGGCUGa-UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 26901 0.69 0.782681
Target:  5'- uCCAgaGG-CCGCUCGACcgcacGCCGGACCc -3'
miRNA:   3'- -GGUg-CCaGGCGGGCUGa----UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 27335 0.66 0.896016
Target:  5'- gCGCGGaaCCGCCaugCGAcCUACCGauGACCAu -3'
miRNA:   3'- gGUGCCa-GGCGG---GCU-GAUGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 28567 0.66 0.907968
Target:  5'- cUCGCGGggagCGUCCGGCUcgagcccccACCcGACCAg -3'
miRNA:   3'- -GGUGCCag--GCGGGCUGA---------UGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 32668 0.67 0.847166
Target:  5'- cCCGCGGcggagaaUCgGCCCGuuuuuCU-CUAGACCAu -3'
miRNA:   3'- -GGUGCC-------AGgCGGGCu----GAuGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34007 0.68 0.808246
Target:  5'- aCUGCGGaUCUcgguggccuuGCCCGACUcCCuGGACCAg -3'
miRNA:   3'- -GGUGCC-AGG----------CGGGCUGAuGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34247 0.68 0.824589
Target:  5'- cCCGCGGUCCGCCauggucagcgCGACa--CGGcGCCGu -3'
miRNA:   3'- -GGUGCCAGGCGG----------GCUGaugGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 34365 0.67 0.86261
Target:  5'- gCCACccuccgCCGCUCGGCUGCCGGGa-- -3'
miRNA:   3'- -GGUGcca---GGCGGGCUGAUGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 36092 0.7 0.690804
Target:  5'- gCCACcucuGGUCCGCgCGACUcagGCgGGAUCGa -3'
miRNA:   3'- -GGUG----CCAGGCGgGCUGA---UGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 38858 0.67 0.86968
Target:  5'- gCCGCGGgaCGCCC-AUcGCCAGACUc -3'
miRNA:   3'- -GGUGCCagGCGGGcUGaUGGUCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.