miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 45940 0.73 0.546848
Target:  5'- gCCGCGGUCCGUCCuGCU-CUGGGCUc -3'
miRNA:   3'- -GGUGCCAGGCGGGcUGAuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 46763 0.66 0.896016
Target:  5'- uCCA-GGUCC-CCCGAC-ACCccgaacuucAGACCGu -3'
miRNA:   3'- -GGUgCCAGGcGGGCUGaUGG---------UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 49708 0.71 0.67166
Target:  5'- aCgGCGGUCCucuccaugauGCCCGGCgagaguUCGGACCGg -3'
miRNA:   3'- -GgUGCCAGG----------CGGGCUGau----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 53803 0.72 0.613765
Target:  5'- gCGCGGUCCG-CCGAgaGCCGGugaACCGu -3'
miRNA:   3'- gGUGCCAGGCgGGCUgaUGGUC---UGGU- -5'
15939 3' -58.6 NC_004065.1 + 61391 0.69 0.791333
Target:  5'- gCCGCgccGGcUCCGCCCGcgGC-ACCAGcGCCAg -3'
miRNA:   3'- -GGUG---CC-AGGCGGGC--UGaUGGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 62383 0.66 0.907968
Target:  5'- gUCACGG-CCGUcccgCCGACgagcaucccgUACCuGACCAc -3'
miRNA:   3'- -GGUGCCaGGCG----GGCUG----------AUGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 63029 0.66 0.906228
Target:  5'- aCCACGGagagCUGUCCGGCgcgcgaggcgacgaUcCCGGACCu -3'
miRNA:   3'- -GGUGCCa---GGCGGGCUG--------------AuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 64320 0.69 0.746945
Target:  5'- aCAgGGUCUGCUgGACU--CGGACCAg -3'
miRNA:   3'- gGUgCCAGGCGGgCUGAugGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 64649 0.66 0.896016
Target:  5'- aCCGCGcGUCCGCCguGCUgGCCgAGAUCu -3'
miRNA:   3'- -GGUGC-CAGGCGGgcUGA-UGG-UCUGGu -5'
15939 3' -58.6 NC_004065.1 + 67016 0.66 0.902096
Target:  5'- gUACGGgccCCGCgCgGGCaGCCAGugCAu -3'
miRNA:   3'- gGUGCCa--GGCG-GgCUGaUGGUCugGU- -5'
15939 3' -58.6 NC_004065.1 + 69422 0.66 0.91908
Target:  5'- gCCA-GGUgCGCgCCGAcCUGCUGGACUc -3'
miRNA:   3'- -GGUgCCAgGCG-GGCU-GAUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 80329 0.69 0.773909
Target:  5'- gCCGCGGcCC-CCCGGCguucgACCugcAGACCc -3'
miRNA:   3'- -GGUGCCaGGcGGGCUGa----UGG---UCUGGu -5'
15939 3' -58.6 NC_004065.1 + 83161 0.66 0.902096
Target:  5'- cCCGCGuUCaCGCgCCGAUgcagACCAGGCg- -3'
miRNA:   3'- -GGUGCcAG-GCG-GGCUGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 90633 0.69 0.765024
Target:  5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3'
miRNA:   3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 91234 0.67 0.86261
Target:  5'- uCUGCGGUCCGCagaaCaGCaGCCAGAgCAc -3'
miRNA:   3'- -GGUGCCAGGCGg---GcUGaUGGUCUgGU- -5'
15939 3' -58.6 NC_004065.1 + 92448 0.69 0.756033
Target:  5'- gCCAUGGUuacaugucCCGCCuuccgCGGCgaugUGCCGGGCCAg -3'
miRNA:   3'- -GGUGCCA--------GGCGG-----GCUG----AUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 93454 0.66 0.91363
Target:  5'- aCCGCaGGaCCagcucCCCGGCUACCGG-CCu -3'
miRNA:   3'- -GGUG-CCaGGc----GGGCUGAUGGUCuGGu -5'
15939 3' -58.6 NC_004065.1 + 93510 0.75 0.421877
Target:  5'- aCCcCGGacCCGCCUGGCUucCCGGACCAg -3'
miRNA:   3'- -GGuGCCa-GGCGGGCUGAu-GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 97661 0.68 0.840309
Target:  5'- gCgACGGcCUGCCCGuGCUACCGccuccacaagccGACCu -3'
miRNA:   3'- -GgUGCCaGGCGGGC-UGAUGGU------------CUGGu -5'
15939 3' -58.6 NC_004065.1 + 98770 0.66 0.907968
Target:  5'- gCGCGcagaacGUCCGCCgccacggaGACgACCAGACCc -3'
miRNA:   3'- gGUGC------CAGGCGGg-------CUGaUGGUCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.