miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 99552 0.67 0.855355
Target:  5'- uCCAUGGUgCCGUCCGGC-GCCAu-CCu -3'
miRNA:   3'- -GGUGCCA-GGCGGGCUGaUGGUcuGGu -5'
15939 3' -58.6 NC_004065.1 + 101290 0.66 0.896016
Target:  5'- gCCgACGG-CUGCCuCGGCgGCCAG-CCGc -3'
miRNA:   3'- -GG-UGCCaGGCGG-GCUGaUGGUCuGGU- -5'
15939 3' -58.6 NC_004065.1 + 101393 0.68 0.824589
Target:  5'- aCgGCGGUCC-CCUGACcuccGCCAacGACCGu -3'
miRNA:   3'- -GgUGCCAGGcGGGCUGa---UGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 103746 0.69 0.791333
Target:  5'- gCGuCGGUUCGCgCGGCggggccuCCGGACCGu -3'
miRNA:   3'- gGU-GCCAGGCGgGCUGau-----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109233 0.71 0.661078
Target:  5'- gCCGCuGUaCCGUCCGggguugaGCUGCCAGAUCGu -3'
miRNA:   3'- -GGUGcCA-GGCGGGC-------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109628 0.68 0.831744
Target:  5'- aCGCGGcgaaggagcagcgUCCGCCCGAUccGCCGGAg-- -3'
miRNA:   3'- gGUGCC-------------AGGCGGGCUGa-UGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 109814 0.67 0.87656
Target:  5'- gCGCGGUCCGCCCaagaaGAUcGgCAGGgCGa -3'
miRNA:   3'- gGUGCCAGGCGGG-----CUGaUgGUCUgGU- -5'
15939 3' -58.6 NC_004065.1 + 109889 0.67 0.883245
Target:  5'- gCCGCGG-CCGCgucggggggucCCGGCUcguccGCCGcGGCCGc -3'
miRNA:   3'- -GGUGCCaGGCG-----------GGCUGA-----UGGU-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 110405 0.69 0.77831
Target:  5'- gCCACGGccgacggcgucuccUCCGCcgCCGGCguccugcacguCCAGGCCAg -3'
miRNA:   3'- -GGUGCC--------------AGGCG--GGCUGau---------GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 111787 0.68 0.840309
Target:  5'- uCCACGcGUCCGUCgaCGGCU-CCGauGACCGc -3'
miRNA:   3'- -GGUGC-CAGGCGG--GCUGAuGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113490 0.67 0.854619
Target:  5'- uCCACGGUCgGCaCCGuacguCUcuuugacGCCgAGGCCGg -3'
miRNA:   3'- -GGUGCCAGgCG-GGCu----GA-------UGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113611 0.69 0.756033
Target:  5'- cCCGCGGUcCCGCCaaggGGCUggaAgCGGACCc -3'
miRNA:   3'- -GGUGCCA-GGCGGg---CUGA---UgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 114219 0.68 0.816492
Target:  5'- cUCACGGUCUGacaCCGGCcgcaguuuccgUGCCcgGGACCGc -3'
miRNA:   3'- -GGUGCCAGGCg--GGCUG-----------AUGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 114871 0.66 0.91908
Target:  5'- aCgACGGUgCCGCcggCCGGCgguuCCgAGGCCAu -3'
miRNA:   3'- -GgUGCCA-GGCG---GGCUGau--GG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 117177 0.68 0.832531
Target:  5'- aCGgGGUCCGCCCcuggggcaGGCguugcGCCAGGCa- -3'
miRNA:   3'- gGUgCCAGGCGGG--------CUGa----UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 117469 0.67 0.86968
Target:  5'- uCCGCGG-CCGCUCGccGCcACCGGugUu -3'
miRNA:   3'- -GGUGCCaGGCGGGC--UGaUGGUCugGu -5'
15939 3' -58.6 NC_004065.1 + 118168 0.68 0.808246
Target:  5'- aCCGCGGcggcggCCGUCaCGGCUGCC--GCCGu -3'
miRNA:   3'- -GGUGCCa-----GGCGG-GCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 120243 0.68 0.824589
Target:  5'- cCCGCGGcguagCGCCUGccCUGCUGGACCGg -3'
miRNA:   3'- -GGUGCCag---GCGGGCu-GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 122126 0.67 0.87656
Target:  5'- aCGCGGgcugcucggagaUCaCGUCCGugauCUGCCGGAUCAu -3'
miRNA:   3'- gGUGCC------------AG-GCGGGCu---GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 124075 0.72 0.613765
Target:  5'- aCCACGGUCagcgcgaaGCCCGGgUG-CAGGCCc -3'
miRNA:   3'- -GGUGCCAGg-------CGGGCUgAUgGUCUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.