miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 125991 0.74 0.50048
Target:  5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3'
miRNA:   3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5'
15939 3' -58.6 NC_004065.1 + 130472 0.7 0.728507
Target:  5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3'
miRNA:   3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 133064 0.7 0.719173
Target:  5'- cCCACGGUUCcCUCGGCgaGCUGGACCu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGa-UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 137490 0.67 0.868981
Target:  5'- gCGCGcGcCCGCCCGcccguacgcgcgcGCgaggcACCGGGCCAa -3'
miRNA:   3'- gGUGC-CaGGCGGGC-------------UGa----UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 138948 0.67 0.883245
Target:  5'- uCCugGGgccagucgCUGCgCGuCUGCgAGACCAg -3'
miRNA:   3'- -GGugCCa-------GGCGgGCuGAUGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 140198 0.7 0.722916
Target:  5'- gCCACGGccuucUCC-CCCGuccugucguuccaguAUUACCGGACCAu -3'
miRNA:   3'- -GGUGCC-----AGGcGGGC---------------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 149713 0.69 0.756033
Target:  5'- gCCGCGG-CCGCgCCGGCccUCGGACUc -3'
miRNA:   3'- -GGUGCCaGGCG-GGCUGauGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 158059 0.66 0.887807
Target:  5'- gCCucCGGgCUGCCCGGCUccaccggcggcgucGCCuccGACCAg -3'
miRNA:   3'- -GGu-GCCaGGCGGGCUGA--------------UGGu--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 158713 0.68 0.799857
Target:  5'- -aAUGGUCugcgCGCCCGACgugcgACCAGcgcgGCCAu -3'
miRNA:   3'- ggUGCCAG----GCGGGCUGa----UGGUC----UGGU- -5'
15939 3' -58.6 NC_004065.1 + 164066 0.67 0.86968
Target:  5'- cCCGaGGUCCGUCUGGCUcACgUAGugCAg -3'
miRNA:   3'- -GGUgCCAGGCGGGCUGA-UG-GUCugGU- -5'
15939 3' -58.6 NC_004065.1 + 165116 0.66 0.896016
Target:  5'- -gGCGGcgucCCGCCCGGCgACUGGcGCCGc -3'
miRNA:   3'- ggUGCCa---GGCGGGCUGaUGGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 165161 0.72 0.594495
Target:  5'- gCCGCGGUCCGCaggaUGGCgaacACCAcGCCGg -3'
miRNA:   3'- -GGUGCCAGGCGg---GCUGa---UGGUcUGGU- -5'
15939 3' -58.6 NC_004065.1 + 170323 0.66 0.910258
Target:  5'- gCCGCGG-CCGCUCGGCgcccuucuacgacgACuCGGACg- -3'
miRNA:   3'- -GGUGCCaGGCGGGCUGa-------------UG-GUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 173632 0.66 0.902096
Target:  5'- gCCAcucgcugauCGGagCGCuCCGACccUGCCGGACCc -3'
miRNA:   3'- -GGU---------GCCagGCG-GGCUG--AUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 186179 0.66 0.889732
Target:  5'- uCCACGGcgucuccgcUCUGUCCGGCcAgCuGACCAa -3'
miRNA:   3'- -GGUGCC---------AGGCGGGCUGaUgGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 187850 0.72 0.604121
Target:  5'- aCACaagaGUCUGUCCGACcACCAGGCCc -3'
miRNA:   3'- gGUGc---CAGGCGGGCUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 192393 0.66 0.889732
Target:  5'- gUCACGGUgaUCGCUCGGgaUACCAGAUUc -3'
miRNA:   3'- -GGUGCCA--GGCGGGCUg-AUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 194826 0.67 0.86968
Target:  5'- -gGCGGUggCCGCCaCGuuCU-CCAGGCCGa -3'
miRNA:   3'- ggUGCCA--GGCGG-GCu-GAuGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 195114 0.67 0.87656
Target:  5'- uCCGCGa-CCGCaCCgGGCUgucuacuuuccGCCAGGCCAg -3'
miRNA:   3'- -GGUGCcaGGCG-GG-CUGA-----------UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 195256 0.66 0.902096
Target:  5'- aCCGCGG-CCgcgaucugGCCCGGCgggaaACUgaGGGCCAg -3'
miRNA:   3'- -GGUGCCaGG--------CGGGCUGa----UGG--UCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.