miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 229761 0.69 0.756033
Target:  5'- cCCGCGGUagucgUGCCgGACaGCCGGACgAa -3'
miRNA:   3'- -GGUGCCAg----GCGGgCUGaUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 223859 0.69 0.773909
Target:  5'- aCuCGG-CCGCCCGGCccgGCCAucucGGCCGg -3'
miRNA:   3'- gGuGCCaGGCGGGCUGa--UGGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 223274 0.66 0.915836
Target:  5'- aCCACGaGgaccgacccgagugCCGCCgCGGCUACCccGAUCGa -3'
miRNA:   3'- -GGUGC-Ca-------------GGCGG-GCUGAUGGu-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 222579 0.66 0.889732
Target:  5'- cCCAaGGUCuccuCGCCCG-CUGCCAcgauGGCCu -3'
miRNA:   3'- -GGUgCCAG----GCGGGCuGAUGGU----CUGGu -5'
15939 3' -58.6 NC_004065.1 + 211994 0.67 0.847919
Target:  5'- cUCGCGca--GCCCGACgaACCAGACCu -3'
miRNA:   3'- -GGUGCcaggCGGGCUGa-UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 207990 0.74 0.473503
Target:  5'- aCCGCGGcCUGCCCGGg-GCCGuGGCCGg -3'
miRNA:   3'- -GGUGCCaGGCGGGCUgaUGGU-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 207955 0.67 0.86968
Target:  5'- gCGCGGguugggCCGCCgCGACcgACCGGAg-- -3'
miRNA:   3'- gGUGCCa-----GGCGG-GCUGa-UGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 207418 0.66 0.91363
Target:  5'- aCAC-GUCCguGCUCGACUcGCCAGGCg- -3'
miRNA:   3'- gGUGcCAGG--CGGGCUGA-UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 205274 0.67 0.855355
Target:  5'- gCCaACGGggggCCGCCCaACgagugcGCCAGACUc -3'
miRNA:   3'- -GG-UGCCa---GGCGGGcUGa-----UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 202326 0.69 0.765024
Target:  5'- cUCuCGGUCCGCCgGGCggAUCAGAgCCu -3'
miRNA:   3'- -GGuGCCAGGCGGgCUGa-UGGUCU-GGu -5'
15939 3' -58.6 NC_004065.1 + 199406 0.66 0.91908
Target:  5'- cCCA-GGUgCCGCUCGACUcgucgaACC-GACCu -3'
miRNA:   3'- -GGUgCCA-GGCGGGCUGA------UGGuCUGGu -5'
15939 3' -58.6 NC_004065.1 + 198563 0.74 0.518836
Target:  5'- gCCGCGGUCUcCCUGGCUACC--GCCGu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 198552 0.66 0.91363
Target:  5'- aCCA-GGUCCGCgCG-CgGCaCGGACCGc -3'
miRNA:   3'- -GGUgCCAGGCGgGCuGaUG-GUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 195256 0.66 0.902096
Target:  5'- aCCGCGG-CCgcgaucugGCCCGGCgggaaACUgaGGGCCAg -3'
miRNA:   3'- -GGUGCCaGG--------CGGGCUGa----UGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 195114 0.67 0.87656
Target:  5'- uCCGCGa-CCGCaCCgGGCUgucuacuuuccGCCAGGCCAg -3'
miRNA:   3'- -GGUGCcaGGCG-GG-CUGA-----------UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 194826 0.67 0.86968
Target:  5'- -gGCGGUggCCGCCaCGuuCU-CCAGGCCGa -3'
miRNA:   3'- ggUGCCA--GGCGG-GCu-GAuGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 192393 0.66 0.889732
Target:  5'- gUCACGGUgaUCGCUCGGgaUACCAGAUUc -3'
miRNA:   3'- -GGUGCCA--GGCGGGCUg-AUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 187850 0.72 0.604121
Target:  5'- aCACaagaGUCUGUCCGACcACCAGGCCc -3'
miRNA:   3'- gGUGc---CAGGCGGGCUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 186179 0.66 0.889732
Target:  5'- uCCACGGcgucuccgcUCUGUCCGGCcAgCuGACCAa -3'
miRNA:   3'- -GGUGCC---------AGGCGGGCUGaUgGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 173632 0.66 0.902096
Target:  5'- gCCAcucgcugauCGGagCGCuCCGACccUGCCGGACCc -3'
miRNA:   3'- -GGU---------GCCagGCG-GGCUG--AUGGUCUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.