miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 170323 0.66 0.910258
Target:  5'- gCCGCGG-CCGCUCGGCgcccuucuacgacgACuCGGACg- -3'
miRNA:   3'- -GGUGCCaGGCGGGCUGa-------------UG-GUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 165161 0.72 0.594495
Target:  5'- gCCGCGGUCCGCaggaUGGCgaacACCAcGCCGg -3'
miRNA:   3'- -GGUGCCAGGCGg---GCUGa---UGGUcUGGU- -5'
15939 3' -58.6 NC_004065.1 + 165116 0.66 0.896016
Target:  5'- -gGCGGcgucCCGCCCGGCgACUGGcGCCGc -3'
miRNA:   3'- ggUGCCa---GGCGGGCUGaUGGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 164066 0.67 0.86968
Target:  5'- cCCGaGGUCCGUCUGGCUcACgUAGugCAg -3'
miRNA:   3'- -GGUgCCAGGCGGGCUGA-UG-GUCugGU- -5'
15939 3' -58.6 NC_004065.1 + 158713 0.68 0.799857
Target:  5'- -aAUGGUCugcgCGCCCGACgugcgACCAGcgcgGCCAu -3'
miRNA:   3'- ggUGCCAG----GCGGGCUGa----UGGUC----UGGU- -5'
15939 3' -58.6 NC_004065.1 + 158059 0.66 0.887807
Target:  5'- gCCucCGGgCUGCCCGGCUccaccggcggcgucGCCuccGACCAg -3'
miRNA:   3'- -GGu-GCCaGGCGGGCUGA--------------UGGu--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 149713 0.69 0.756033
Target:  5'- gCCGCGG-CCGCgCCGGCccUCGGACUc -3'
miRNA:   3'- -GGUGCCaGGCG-GGCUGauGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 140198 0.7 0.722916
Target:  5'- gCCACGGccuucUCC-CCCGuccugucguuccaguAUUACCGGACCAu -3'
miRNA:   3'- -GGUGCC-----AGGcGGGC---------------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 138948 0.67 0.883245
Target:  5'- uCCugGGgccagucgCUGCgCGuCUGCgAGACCAg -3'
miRNA:   3'- -GGugCCa-------GGCGgGCuGAUGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 137490 0.67 0.868981
Target:  5'- gCGCGcGcCCGCCCGcccguacgcgcgcGCgaggcACCGGGCCAa -3'
miRNA:   3'- gGUGC-CaGGCGGGC-------------UGa----UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 133064 0.7 0.719173
Target:  5'- cCCACGGUUCcCUCGGCgaGCUGGACCu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGa-UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 130472 0.7 0.728507
Target:  5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3'
miRNA:   3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 125991 0.74 0.50048
Target:  5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3'
miRNA:   3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5'
15939 3' -58.6 NC_004065.1 + 124075 0.72 0.613765
Target:  5'- aCCACGGUCagcgcgaaGCCCGGgUG-CAGGCCc -3'
miRNA:   3'- -GGUGCCAGg-------CGGGCUgAUgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 122126 0.67 0.87656
Target:  5'- aCGCGGgcugcucggagaUCaCGUCCGugauCUGCCGGAUCAu -3'
miRNA:   3'- gGUGCC------------AG-GCGGGCu---GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 120243 0.68 0.824589
Target:  5'- cCCGCGGcguagCGCCUGccCUGCUGGACCGg -3'
miRNA:   3'- -GGUGCCag---GCGGGCu-GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 118168 0.68 0.808246
Target:  5'- aCCGCGGcggcggCCGUCaCGGCUGCC--GCCGu -3'
miRNA:   3'- -GGUGCCa-----GGCGG-GCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 117469 0.67 0.86968
Target:  5'- uCCGCGG-CCGCUCGccGCcACCGGugUu -3'
miRNA:   3'- -GGUGCCaGGCGGGC--UGaUGGUCugGu -5'
15939 3' -58.6 NC_004065.1 + 117177 0.68 0.832531
Target:  5'- aCGgGGUCCGCCCcuggggcaGGCguugcGCCAGGCa- -3'
miRNA:   3'- gGUgCCAGGCGGG--------CUGa----UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 114871 0.66 0.91908
Target:  5'- aCgACGGUgCCGCcggCCGGCgguuCCgAGGCCAu -3'
miRNA:   3'- -GgUGCCA-GGCG---GGCUGau--GG-UCUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.