miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 114219 0.68 0.816492
Target:  5'- cUCACGGUCUGacaCCGGCcgcaguuuccgUGCCcgGGACCGc -3'
miRNA:   3'- -GGUGCCAGGCg--GGCUG-----------AUGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113611 0.69 0.756033
Target:  5'- cCCGCGGUcCCGCCaaggGGCUggaAgCGGACCc -3'
miRNA:   3'- -GGUGCCA-GGCGGg---CUGA---UgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 113490 0.67 0.854619
Target:  5'- uCCACGGUCgGCaCCGuacguCUcuuugacGCCgAGGCCGg -3'
miRNA:   3'- -GGUGCCAGgCG-GGCu----GA-------UGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 111787 0.68 0.840309
Target:  5'- uCCACGcGUCCGUCgaCGGCU-CCGauGACCGc -3'
miRNA:   3'- -GGUGC-CAGGCGG--GCUGAuGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 110405 0.69 0.77831
Target:  5'- gCCACGGccgacggcgucuccUCCGCcgCCGGCguccugcacguCCAGGCCAg -3'
miRNA:   3'- -GGUGCC--------------AGGCG--GGCUGau---------GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109889 0.67 0.883245
Target:  5'- gCCGCGG-CCGCgucggggggucCCGGCUcguccGCCGcGGCCGc -3'
miRNA:   3'- -GGUGCCaGGCG-----------GGCUGA-----UGGU-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109814 0.67 0.87656
Target:  5'- gCGCGGUCCGCCCaagaaGAUcGgCAGGgCGa -3'
miRNA:   3'- gGUGCCAGGCGGG-----CUGaUgGUCUgGU- -5'
15939 3' -58.6 NC_004065.1 + 109628 0.68 0.831744
Target:  5'- aCGCGGcgaaggagcagcgUCCGCCCGAUccGCCGGAg-- -3'
miRNA:   3'- gGUGCC-------------AGGCGGGCUGa-UGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 109233 0.71 0.661078
Target:  5'- gCCGCuGUaCCGUCCGggguugaGCUGCCAGAUCGu -3'
miRNA:   3'- -GGUGcCA-GGCGGGC-------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 103746 0.69 0.791333
Target:  5'- gCGuCGGUUCGCgCGGCggggccuCCGGACCGu -3'
miRNA:   3'- gGU-GCCAGGCGgGCUGau-----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 101393 0.68 0.824589
Target:  5'- aCgGCGGUCC-CCUGACcuccGCCAacGACCGu -3'
miRNA:   3'- -GgUGCCAGGcGGGCUGa---UGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 101290 0.66 0.896016
Target:  5'- gCCgACGG-CUGCCuCGGCgGCCAG-CCGc -3'
miRNA:   3'- -GG-UGCCaGGCGG-GCUGaUGGUCuGGU- -5'
15939 3' -58.6 NC_004065.1 + 99552 0.67 0.855355
Target:  5'- uCCAUGGUgCCGUCCGGC-GCCAu-CCu -3'
miRNA:   3'- -GGUGCCA-GGCGGGCUGaUGGUcuGGu -5'
15939 3' -58.6 NC_004065.1 + 98770 0.66 0.907968
Target:  5'- gCGCGcagaacGUCCGCCgccacggaGACgACCAGACCc -3'
miRNA:   3'- gGUGC------CAGGCGGg-------CUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 97661 0.68 0.840309
Target:  5'- gCgACGGcCUGCCCGuGCUACCGccuccacaagccGACCu -3'
miRNA:   3'- -GgUGCCaGGCGGGC-UGAUGGU------------CUGGu -5'
15939 3' -58.6 NC_004065.1 + 93510 0.75 0.421877
Target:  5'- aCCcCGGacCCGCCUGGCUucCCGGACCAg -3'
miRNA:   3'- -GGuGCCa-GGCGGGCUGAu-GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 93454 0.66 0.91363
Target:  5'- aCCGCaGGaCCagcucCCCGGCUACCGG-CCu -3'
miRNA:   3'- -GGUG-CCaGGc----GGGCUGAUGGUCuGGu -5'
15939 3' -58.6 NC_004065.1 + 92448 0.69 0.756033
Target:  5'- gCCAUGGUuacaugucCCGCCuuccgCGGCgaugUGCCGGGCCAg -3'
miRNA:   3'- -GGUGCCA--------GGCGG-----GCUG----AUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 91234 0.67 0.86261
Target:  5'- uCUGCGGUCCGCagaaCaGCaGCCAGAgCAc -3'
miRNA:   3'- -GGUGCCAGGCGg---GcUGaUGGUCUgGU- -5'
15939 3' -58.6 NC_004065.1 + 90633 0.69 0.765024
Target:  5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3'
miRNA:   3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.