miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 103746 0.69 0.791333
Target:  5'- gCGuCGGUUCGCgCGGCggggccuCCGGACCGu -3'
miRNA:   3'- gGU-GCCAGGCGgGCUGau-----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 149713 0.69 0.756033
Target:  5'- gCCGCGG-CCGCgCCGGCccUCGGACUc -3'
miRNA:   3'- -GGUGCCaGGCG-GGCUGauGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 92448 0.69 0.756033
Target:  5'- gCCAUGGUuacaugucCCGCCuuccgCGGCgaugUGCCGGGCCAg -3'
miRNA:   3'- -GGUGCCA--------GGCGG-----GCUG----AUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113611 0.69 0.756033
Target:  5'- cCCGCGGUcCCGCCaaggGGCUggaAgCGGACCc -3'
miRNA:   3'- -GGUGCCA-GGCGGg---CUGA---UgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 229761 0.69 0.756033
Target:  5'- cCCGCGGUagucgUGCCgGACaGCCGGACgAa -3'
miRNA:   3'- -GGUGCCAg----GCGGgCUGaUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 202326 0.69 0.765024
Target:  5'- cUCuCGGUCCGCCgGGCggAUCAGAgCCu -3'
miRNA:   3'- -GGuGCCAGGCGGgCUGa-UGGUCU-GGu -5'
15939 3' -58.6 NC_004065.1 + 223859 0.69 0.773909
Target:  5'- aCuCGG-CCGCCCGGCccgGCCAucucGGCCGg -3'
miRNA:   3'- gGuGCCaGGCGGGCUGa--UGGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 110405 0.69 0.77831
Target:  5'- gCCACGGccgacggcgucuccUCCGCcgCCGGCguccugcacguCCAGGCCAg -3'
miRNA:   3'- -GGUGCC--------------AGGCG--GGCUGau---------GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 26901 0.69 0.782681
Target:  5'- uCCAgaGG-CCGCUCGACcgcacGCCGGACCc -3'
miRNA:   3'- -GGUg-CCaGGCGGGCUGa----UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 25898 0.69 0.756033
Target:  5'- aUCACGGc---CCCGGCggGCCAGGCCAu -3'
miRNA:   3'- -GGUGCCaggcGGGCUGa-UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 64320 0.69 0.746945
Target:  5'- aCAgGGUCUGCUgGACU--CGGACCAg -3'
miRNA:   3'- gGUgCCAGGCGGgCUGAugGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 23678 0.69 0.746945
Target:  5'- aCACGGUuccCCGUCCGuACcgagGCCAGACa- -3'
miRNA:   3'- gGUGCCA---GGCGGGC-UGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 8099 0.87 0.085571
Target:  5'- aCCACGGUCCGCCCGACUACaaaACCc -3'
miRNA:   3'- -GGUGCCAGGCGGGCUGAUGgucUGGu -5'
15939 3' -58.6 NC_004065.1 + 8069 0.85 0.112569
Target:  5'- aCCACGGUCaGUCCuACUACCAGACCAa -3'
miRNA:   3'- -GGUGCCAGgCGGGcUGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 8009 0.83 0.154675
Target:  5'- aCCACaGUCCGUCCuACUACCAGACCc -3'
miRNA:   3'- -GGUGcCAGGCGGGcUGAUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 93510 0.75 0.421877
Target:  5'- aCCcCGGacCCGCCUGGCUucCCGGACCAg -3'
miRNA:   3'- -GGuGCCa-GGCGGGCUGAu-GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 187850 0.72 0.604121
Target:  5'- aCACaagaGUCUGUCCGACcACCAGGCCc -3'
miRNA:   3'- gGUGc---CAGGCGGGCUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 124075 0.72 0.613765
Target:  5'- aCCACGGUCagcgcgaaGCCCGGgUG-CAGGCCc -3'
miRNA:   3'- -GGUGCCAGg-------CGGGCUgAUgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 49708 0.71 0.67166
Target:  5'- aCgGCGGUCCucuccaugauGCCCGGCgagaguUCGGACCGg -3'
miRNA:   3'- -GgUGCCAGG----------CGGGCUGau----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 133064 0.7 0.719173
Target:  5'- cCCACGGUUCcCUCGGCgaGCUGGACCu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGa-UGGUCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.