miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 92448 0.69 0.756033
Target:  5'- gCCAUGGUuacaugucCCGCCuuccgCGGCgaugUGCCGGGCCAg -3'
miRNA:   3'- -GGUGCCA--------GGCGG-----GCUG----AUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 118168 0.68 0.808246
Target:  5'- aCCGCGGcggcggCCGUCaCGGCUGCC--GCCGu -3'
miRNA:   3'- -GGUGCCa-----GGCGG-GCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 24579 0.68 0.808246
Target:  5'- gCGCGGUCCGCgCGugUcgucGCC--GCCAc -3'
miRNA:   3'- gGUGCCAGGCGgGCugA----UGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34007 0.68 0.808246
Target:  5'- aCUGCGGaUCUcgguggccuuGCCCGACUcCCuGGACCAg -3'
miRNA:   3'- -GGUGCC-AGG----------CGGGCUGAuGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 158713 0.68 0.799857
Target:  5'- -aAUGGUCugcgCGCCCGACgugcgACCAGcgcgGCCAu -3'
miRNA:   3'- ggUGCCAG----GCGGGCUGa----UGGUC----UGGU- -5'
15939 3' -58.6 NC_004065.1 + 103746 0.69 0.791333
Target:  5'- gCGuCGGUUCGCgCGGCggggccuCCGGACCGu -3'
miRNA:   3'- gGU-GCCAGGCGgGCUGau-----GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 26901 0.69 0.782681
Target:  5'- uCCAgaGG-CCGCUCGACcgcacGCCGGACCc -3'
miRNA:   3'- -GGUg-CCaGGCGGGCUGa----UGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 110405 0.69 0.77831
Target:  5'- gCCACGGccgacggcgucuccUCCGCcgCCGGCguccugcacguCCAGGCCAg -3'
miRNA:   3'- -GGUGCC--------------AGGCG--GGCUGau---------GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 223859 0.69 0.773909
Target:  5'- aCuCGG-CCGCCCGGCccgGCCAucucGGCCGg -3'
miRNA:   3'- gGuGCCaGGCGGGCUGa--UGGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 202326 0.69 0.765024
Target:  5'- cUCuCGGUCCGCCgGGCggAUCAGAgCCu -3'
miRNA:   3'- -GGuGCCAGGCGGgCUGa-UGGUCU-GGu -5'
15939 3' -58.6 NC_004065.1 + 229761 0.69 0.756033
Target:  5'- cCCGCGGUagucgUGCCgGACaGCCGGACgAa -3'
miRNA:   3'- -GGUGCCAg----GCGGgCUGaUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 113611 0.69 0.756033
Target:  5'- cCCGCGGUcCCGCCaaggGGCUggaAgCGGACCc -3'
miRNA:   3'- -GGUGCCA-GGCGGg---CUGA---UgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 36092 0.7 0.690804
Target:  5'- gCCACcucuGGUCCGCgCGACUcagGCgGGAUCGa -3'
miRNA:   3'- -GGUG----CCAGGCGgGCUGA---UGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109233 0.71 0.661078
Target:  5'- gCCGCuGUaCCGUCCGggguugaGCUGCCAGAUCGu -3'
miRNA:   3'- -GGUGcCA-GGCGGGC-------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 53803 0.72 0.613765
Target:  5'- gCGCGGUCCG-CCGAgaGCCGGugaACCGu -3'
miRNA:   3'- gGUGCCAGGCgGGCUgaUGGUC---UGGU- -5'
15939 3' -58.6 NC_004065.1 + 165161 0.72 0.594495
Target:  5'- gCCGCGGUCCGCaggaUGGCgaacACCAcGCCGg -3'
miRNA:   3'- -GGUGCCAGGCGg---GCUGa---UGGUcUGGU- -5'
15939 3' -58.6 NC_004065.1 + 45940 0.73 0.546848
Target:  5'- gCCGCGGUCCGUCCuGCU-CUGGGCUc -3'
miRNA:   3'- -GGUGCCAGGCGGGcUGAuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 198563 0.74 0.518836
Target:  5'- gCCGCGGUCUcCCUGGCUACC--GCCGu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 125991 0.74 0.50048
Target:  5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3'
miRNA:   3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5'
15939 3' -58.6 NC_004065.1 + 114871 0.66 0.91908
Target:  5'- aCgACGGUgCCGCcggCCGGCgguuCCgAGGCCAu -3'
miRNA:   3'- -GgUGCCA-GGCG---GGCUGau--GG-UCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.