Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 91234 | 0.67 | 0.86261 |
Target: 5'- uCUGCGGUCCGCagaaCaGCaGCCAGAgCAc -3' miRNA: 3'- -GGUGCCAGGCGg---GcUGaUGGUCUgGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 137490 | 0.67 | 0.868981 |
Target: 5'- gCGCGcGcCCGCCCGcccguacgcgcgcGCgaggcACCGGGCCAa -3' miRNA: 3'- gGUGC-CaGGCGGGC-------------UGa----UGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 207955 | 0.67 | 0.86968 |
Target: 5'- gCGCGGguugggCCGCCgCGACcgACCGGAg-- -3' miRNA: 3'- gGUGCCa-----GGCGG-GCUGa-UGGUCUggu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 164066 | 0.67 | 0.86968 |
Target: 5'- cCCGaGGUCCGUCUGGCUcACgUAGugCAg -3' miRNA: 3'- -GGUgCCAGGCGGGCUGA-UG-GUCugGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 109814 | 0.67 | 0.87656 |
Target: 5'- gCGCGGUCCGCCCaagaaGAUcGgCAGGgCGa -3' miRNA: 3'- gGUGCCAGGCGGG-----CUGaUgGUCUgGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 101393 | 0.68 | 0.824589 |
Target: 5'- aCgGCGGUCC-CCUGACcuccGCCAacGACCGu -3' miRNA: 3'- -GgUGCCAGGcGGGCUGa---UGGU--CUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 18680 | 0.68 | 0.799857 |
Target: 5'- gCACGaGUCCGCCuCGGuCgGCuCAGGCCu -3' miRNA: 3'- gGUGC-CAGGCGG-GCU-GaUG-GUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 61391 | 0.69 | 0.791333 |
Target: 5'- gCCGCgccGGcUCCGCCCGcgGC-ACCAGcGCCAg -3' miRNA: 3'- -GGUG---CC-AGGCGGGC--UGaUGGUC-UGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 125991 | 0.74 | 0.50048 |
Target: 5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3' miRNA: 3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 198563 | 0.74 | 0.518836 |
Target: 5'- gCCGCGGUCUcCCUGGCUACC--GCCGu -3' miRNA: 3'- -GGUGCCAGGcGGGCUGAUGGucUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 45940 | 0.73 | 0.546848 |
Target: 5'- gCCGCGGUCCGUCCuGCU-CUGGGCUc -3' miRNA: 3'- -GGUGCCAGGCGGGcUGAuGGUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 165161 | 0.72 | 0.594495 |
Target: 5'- gCCGCGGUCCGCaggaUGGCgaacACCAcGCCGg -3' miRNA: 3'- -GGUGCCAGGCGg---GCUGa---UGGUcUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 53803 | 0.72 | 0.613765 |
Target: 5'- gCGCGGUCCG-CCGAgaGCCGGugaACCGu -3' miRNA: 3'- gGUGCCAGGCgGGCUgaUGGUC---UGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 109233 | 0.71 | 0.661078 |
Target: 5'- gCCGCuGUaCCGUCCGggguugaGCUGCCAGAUCGu -3' miRNA: 3'- -GGUGcCA-GGCGGGC-------UGAUGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 36092 | 0.7 | 0.690804 |
Target: 5'- gCCACcucuGGUCCGCgCGACUcagGCgGGAUCGa -3' miRNA: 3'- -GGUG----CCAGGCGgGCUGA---UGgUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 855 | 0.7 | 0.719173 |
Target: 5'- aCGCGGagCGCauGACUGCCGGGCgAg -3' miRNA: 3'- gGUGCCagGCGggCUGAUGGUCUGgU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 140198 | 0.7 | 0.722916 |
Target: 5'- gCCACGGccuucUCC-CCCGuccugucguuccaguAUUACCGGACCAu -3' miRNA: 3'- -GGUGCC-----AGGcGGGC---------------UGAUGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 130472 | 0.7 | 0.728507 |
Target: 5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3' miRNA: 3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 90633 | 0.69 | 0.765024 |
Target: 5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3' miRNA: 3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 80329 | 0.69 | 0.773909 |
Target: 5'- gCCGCGGcCC-CCCGGCguucgACCugcAGACCc -3' miRNA: 3'- -GGUGCCaGGcGGGCUGa----UGG---UCUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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