Results 81 - 93 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 198563 | 0.74 | 0.518836 |
Target: 5'- gCCGCGGUCUcCCUGGCUACC--GCCGu -3' miRNA: 3'- -GGUGCCAGGcGGGCUGAUGGucUGGU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 125991 | 0.74 | 0.50048 |
Target: 5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3' miRNA: 3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 140198 | 0.7 | 0.722916 |
Target: 5'- gCCACGGccuucUCC-CCCGuccugucguuccaguAUUACCGGACCAu -3' miRNA: 3'- -GGUGCC-----AGGcGGGC---------------UGAUGGUCUGGU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 130472 | 0.7 | 0.728507 |
Target: 5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3' miRNA: 3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 97661 | 0.68 | 0.840309 |
Target: 5'- gCgACGGcCUGCCCGuGCUACCGccuccacaagccGACCu -3' miRNA: 3'- -GgUGCCaGGCGGGC-UGAUGGU------------CUGGu -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 109628 | 0.68 | 0.831744 |
Target: 5'- aCGCGGcgaaggagcagcgUCCGCCCGAUccGCCGGAg-- -3' miRNA: 3'- gGUGCC-------------AGGCGGGCUGa-UGGUCUggu -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 120243 | 0.68 | 0.824589 |
Target: 5'- cCCGCGGcguagCGCCUGccCUGCUGGACCGg -3' miRNA: 3'- -GGUGCCag---GCGGGCu-GAUGGUCUGGU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 101393 | 0.68 | 0.824589 |
Target: 5'- aCgGCGGUCC-CCUGACcuccGCCAacGACCGu -3' miRNA: 3'- -GgUGCCAGGcGGGCUGa---UGGU--CUGGU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 18680 | 0.68 | 0.799857 |
Target: 5'- gCACGaGUCCGCCuCGGuCgGCuCAGGCCu -3' miRNA: 3'- gGUGC-CAGGCGG-GCU-GaUG-GUCUGGu -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 61391 | 0.69 | 0.791333 |
Target: 5'- gCCGCgccGGcUCCGCCCGcgGC-ACCAGcGCCAg -3' miRNA: 3'- -GGUG---CC-AGGCGGGC--UGaUGGUC-UGGU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 80329 | 0.69 | 0.773909 |
Target: 5'- gCCGCGGcCC-CCCGGCguucgACCugcAGACCc -3' miRNA: 3'- -GGUGCCaGGcGGGCUGa----UGG---UCUGGu -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 90633 | 0.69 | 0.765024 |
Target: 5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3' miRNA: 3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5' |
|||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 207990 | 0.74 | 0.473503 |
Target: 5'- aCCGCGGcCUGCCCGGg-GCCGuGGCCGg -3' miRNA: 3'- -GGUGCCaGGCGGGCUgaUGGU-CUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home