miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 207990 0.74 0.473503
Target:  5'- aCCGCGGcCUGCCCGGg-GCCGuGGCCGg -3'
miRNA:   3'- -GGUGCCaGGCGGGCUgaUGGU-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109628 0.68 0.831744
Target:  5'- aCGCGGcgaaggagcagcgUCCGCCCGAUccGCCGGAg-- -3'
miRNA:   3'- gGUGCC-------------AGGCGGGCUGa-UGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 32668 0.67 0.847166
Target:  5'- cCCGCGGcggagaaUCgGCCCGuuuuuCU-CUAGACCAu -3'
miRNA:   3'- -GGUGCC-------AGgCGGGCu----GAuGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 114871 0.66 0.91908
Target:  5'- aCgACGGUgCCGCcggCCGGCgguuCCgAGGCCAu -3'
miRNA:   3'- -GgUGCCA-GGCG---GGCUGau--GG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 165161 0.72 0.594495
Target:  5'- gCCGCGGUCCGCaggaUGGCgaacACCAcGCCGg -3'
miRNA:   3'- -GGUGCCAGGCGg---GCUGa---UGGUcUGGU- -5'
15939 3' -58.6 NC_004065.1 + 53803 0.72 0.613765
Target:  5'- gCGCGGUCCG-CCGAgaGCCGGugaACCGu -3'
miRNA:   3'- gGUGCCAGGCgGGCUgaUGGUC---UGGU- -5'
15939 3' -58.6 NC_004065.1 + 36092 0.7 0.690804
Target:  5'- gCCACcucuGGUCCGCgCGACUcagGCgGGAUCGa -3'
miRNA:   3'- -GGUG----CCAGGCGgGCUGA---UGgUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 855 0.7 0.719173
Target:  5'- aCGCGGagCGCauGACUGCCGGGCgAg -3'
miRNA:   3'- gGUGCCagGCGggCUGAUGGUCUGgU- -5'
15939 3' -58.6 NC_004065.1 + 90633 0.69 0.765024
Target:  5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3'
miRNA:   3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 120243 0.68 0.824589
Target:  5'- cCCGCGGcguagCGCCUGccCUGCUGGACCGg -3'
miRNA:   3'- -GGUGCCag---GCGGGCu-GAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 61391 0.69 0.791333
Target:  5'- gCCGCgccGGcUCCGCCCGcgGC-ACCAGcGCCAg -3'
miRNA:   3'- -GGUG---CC-AGGCGGGC--UGaUGGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 130472 0.7 0.728507
Target:  5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3'
miRNA:   3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 125991 0.74 0.50048
Target:  5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3'
miRNA:   3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5'
15939 3' -58.6 NC_004065.1 + 18680 0.68 0.799857
Target:  5'- gCACGaGUCCGCCuCGGuCgGCuCAGGCCu -3'
miRNA:   3'- gGUGC-CAGGCGG-GCU-GaUG-GUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 198563 0.74 0.518836
Target:  5'- gCCGCGGUCUcCCUGGCUACC--GCCGu -3'
miRNA:   3'- -GGUGCCAGGcGGGCUGAUGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 140198 0.7 0.722916
Target:  5'- gCCACGGccuucUCC-CCCGuccugucguuccaguAUUACCGGACCAu -3'
miRNA:   3'- -GGUGCC-----AGGcGGGC---------------UGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 101393 0.68 0.824589
Target:  5'- aCgGCGGUCC-CCUGACcuccGCCAacGACCGu -3'
miRNA:   3'- -GgUGCCAGGcGGGCUGa---UGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 97661 0.68 0.840309
Target:  5'- gCgACGGcCUGCCCGuGCUACCGccuccacaagccGACCu -3'
miRNA:   3'- -GgUGCCaGGCGGGC-UGAUGGU------------CUGGu -5'
15939 3' -58.6 NC_004065.1 + 45940 0.73 0.546848
Target:  5'- gCCGCGGUCCGUCCuGCU-CUGGGCUc -3'
miRNA:   3'- -GGUGCCAGGCGGGcUGAuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 109233 0.71 0.661078
Target:  5'- gCCGCuGUaCCGUCCGggguugaGCUGCCAGAUCGu -3'
miRNA:   3'- -GGUGcCA-GGCGGGC-------UGAUGGUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.