Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15939 | 3' | -58.6 | NC_004065.1 | + | 99552 | 0.67 | 0.855355 |
Target: 5'- uCCAUGGUgCCGUCCGGC-GCCAu-CCu -3' miRNA: 3'- -GGUGCCA-GGCGGGCUGaUGGUcuGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 32668 | 0.67 | 0.847166 |
Target: 5'- cCCGCGGcggagaaUCgGCCCGuuuuuCU-CUAGACCAu -3' miRNA: 3'- -GGUGCC-------AGgCGGGCu----GAuGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 130472 | 0.7 | 0.728507 |
Target: 5'- aCCACGGccgUCCGCCgCGGCgagacgggagcGCC-GACCAg -3' miRNA: 3'- -GGUGCC---AGGCGG-GCUGa----------UGGuCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 45940 | 0.73 | 0.546848 |
Target: 5'- gCCGCGGUCCGUCCuGCU-CUGGGCUc -3' miRNA: 3'- -GGUGCCAGGCGGGcUGAuGGUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 27335 | 0.66 | 0.896016 |
Target: 5'- gCGCGGaaCCGCCaugCGAcCUACCGauGACCAu -3' miRNA: 3'- gGUGCCa-GGCGG---GCU-GAUGGU--CUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 164066 | 0.67 | 0.86968 |
Target: 5'- cCCGaGGUCCGUCUGGCUcACgUAGugCAg -3' miRNA: 3'- -GGUgCCAGGCGGGCUGA-UG-GUCugGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 109628 | 0.68 | 0.831744 |
Target: 5'- aCGCGGcgaaggagcagcgUCCGCCCGAUccGCCGGAg-- -3' miRNA: 3'- gGUGCC-------------AGGCGGGCUGa-UGGUCUggu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 198563 | 0.74 | 0.518836 |
Target: 5'- gCCGCGGUCUcCCUGGCUACC--GCCGu -3' miRNA: 3'- -GGUGCCAGGcGGGCUGAUGGucUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 207955 | 0.67 | 0.86968 |
Target: 5'- gCGCGGguugggCCGCCgCGACcgACCGGAg-- -3' miRNA: 3'- gGUGCCa-----GGCGG-GCUGa-UGGUCUggu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 125991 | 0.74 | 0.50048 |
Target: 5'- aCCGgcucCGGUCCGCCCGAauCUcccacugucgucGCCAGACuCAg -3' miRNA: 3'- -GGU----GCCAGGCGGGCU--GA------------UGGUCUG-GU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 97661 | 0.68 | 0.840309 |
Target: 5'- gCgACGGcCUGCCCGuGCUACCGccuccacaagccGACCu -3' miRNA: 3'- -GgUGCCaGGCGGGC-UGAUGGU------------CUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 16551 | 0.67 | 0.86261 |
Target: 5'- gUCGCGGcgaCCGCuCCGACUACaccuCAGcCCGa -3' miRNA: 3'- -GGUGCCa--GGCG-GGCUGAUG----GUCuGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 18680 | 0.68 | 0.799857 |
Target: 5'- gCACGaGUCCGCCuCGGuCgGCuCAGGCCu -3' miRNA: 3'- gGUGC-CAGGCGG-GCU-GaUG-GUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 90633 | 0.69 | 0.765024 |
Target: 5'- gCGCGGgCCGUCgCGACcccAUCAGACCGc -3' miRNA: 3'- gGUGCCaGGCGG-GCUGa--UGGUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 36092 | 0.7 | 0.690804 |
Target: 5'- gCCACcucuGGUCCGCgCGACUcagGCgGGAUCGa -3' miRNA: 3'- -GGUG----CCAGGCGgGCUGA---UGgUCUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 165161 | 0.72 | 0.594495 |
Target: 5'- gCCGCGGUCCGCaggaUGGCgaacACCAcGCCGg -3' miRNA: 3'- -GGUGCCAGGCGg---GCUGa---UGGUcUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 98770 | 0.66 | 0.907968 |
Target: 5'- gCGCGcagaacGUCCGCCgccacggaGACgACCAGACCc -3' miRNA: 3'- gGUGC------CAGGCGGg-------CUGaUGGUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 173632 | 0.66 | 0.902096 |
Target: 5'- gCCAcucgcugauCGGagCGCuCCGACccUGCCGGACCc -3' miRNA: 3'- -GGU---------GCCagGCG-GGCUG--AUGGUCUGGu -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 158059 | 0.66 | 0.887807 |
Target: 5'- gCCucCGGgCUGCCCGGCUccaccggcggcgucGCCuccGACCAg -3' miRNA: 3'- -GGu-GCCaGGCGGGCUGA--------------UGGu--CUGGU- -5' |
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15939 | 3' | -58.6 | NC_004065.1 | + | 109814 | 0.67 | 0.87656 |
Target: 5'- gCGCGGUCCGCCCaagaaGAUcGgCAGGgCGa -3' miRNA: 3'- gGUGCCAGGCGGG-----CUGaUgGUCUgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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