miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 173632 0.66 0.902096
Target:  5'- gCCAcucgcugauCGGagCGCuCCGACccUGCCGGACCc -3'
miRNA:   3'- -GGU---------GCCagGCG-GGCUG--AUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 187850 0.72 0.604121
Target:  5'- aCACaagaGUCUGUCCGACcACCAGGCCc -3'
miRNA:   3'- gGUGc---CAGGCGGGCUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 34365 0.67 0.86261
Target:  5'- gCCACccuccgCCGCUCGGCUGCCGGGa-- -3'
miRNA:   3'- -GGUGcca---GGCGGGCUGAUGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 124075 0.72 0.613765
Target:  5'- aCCACGGUCagcgcgaaGCCCGGgUG-CAGGCCc -3'
miRNA:   3'- -GGUGCCAGg-------CGGGCUgAUgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 199406 0.66 0.91908
Target:  5'- cCCA-GGUgCCGCUCGACUcgucgaACC-GACCu -3'
miRNA:   3'- -GGUgCCA-GGCGGGCUGA------UGGuCUGGu -5'
15939 3' -58.6 NC_004065.1 + 69422 0.66 0.91908
Target:  5'- gCCA-GGUgCGCgCCGAcCUGCUGGACUc -3'
miRNA:   3'- -GGUgCCAgGCG-GGCU-GAUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 8069 0.85 0.112569
Target:  5'- aCCACGGUCaGUCCuACUACCAGACCAa -3'
miRNA:   3'- -GGUGCCAGgCGGGcUGAUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 223274 0.66 0.915836
Target:  5'- aCCACGaGgaccgacccgagugCCGCCgCGGCUACCccGAUCGa -3'
miRNA:   3'- -GGUGC-Ca-------------GGCGG-GCUGAUGGu-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 198552 0.66 0.91363
Target:  5'- aCCA-GGUCCGCgCG-CgGCaCGGACCGc -3'
miRNA:   3'- -GGUgCCAGGCGgGCuGaUG-GUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 207418 0.66 0.91363
Target:  5'- aCAC-GUCCguGCUCGACUcGCCAGGCg- -3'
miRNA:   3'- gGUGcCAGG--CGGGCUGA-UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 114219 0.68 0.816492
Target:  5'- cUCACGGUCUGacaCCGGCcgcaguuuccgUGCCcgGGACCGc -3'
miRNA:   3'- -GGUGCCAGGCg--GGCUG-----------AUGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34247 0.68 0.824589
Target:  5'- cCCGCGGUCCGCCauggucagcgCGACa--CGGcGCCGu -3'
miRNA:   3'- -GGUGCCAGGCGG----------GCUGaugGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 117177 0.68 0.832531
Target:  5'- aCGgGGUCCGCCCcuggggcaGGCguugcGCCAGGCa- -3'
miRNA:   3'- gGUgCCAGGCGGG--------CUGa----UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 111787 0.68 0.840309
Target:  5'- uCCACGcGUCCGUCgaCGGCU-CCGauGACCGc -3'
miRNA:   3'- -GGUGC-CAGGCGG--GCUGAuGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113490 0.67 0.854619
Target:  5'- uCCACGGUCgGCaCCGuacguCUcuuugacGCCgAGGCCGg -3'
miRNA:   3'- -GGUGCCAGgCG-GGCu----GA-------UGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 24579 0.68 0.808246
Target:  5'- gCGCGGUCCGCgCGugUcgucGCC--GCCAc -3'
miRNA:   3'- gGUGCCAGGCGgGCugA----UGGucUGGU- -5'
15939 3' -58.6 NC_004065.1 + 113611 0.69 0.756033
Target:  5'- cCCGCGGUcCCGCCaaggGGCUggaAgCGGACCc -3'
miRNA:   3'- -GGUGCCA-GGCGGg---CUGA---UgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 92448 0.69 0.756033
Target:  5'- gCCAUGGUuacaugucCCGCCuuccgCGGCgaugUGCCGGGCCAg -3'
miRNA:   3'- -GGUGCCA--------GGCGG-----GCUG----AUGGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 149713 0.69 0.756033
Target:  5'- gCCGCGG-CCGCgCCGGCccUCGGACUc -3'
miRNA:   3'- -GGUGCCaGGCG-GGCUGauGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 25898 0.69 0.756033
Target:  5'- aUCACGGc---CCCGGCggGCCAGGCCAu -3'
miRNA:   3'- -GGUGCCaggcGGGCUGa-UGGUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.