miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15939 3' -58.6 NC_004065.1 + 124075 0.72 0.613765
Target:  5'- aCCACGGUCagcgcgaaGCCCGGgUG-CAGGCCc -3'
miRNA:   3'- -GGUGCCAGg-------CGGGCUgAUgGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 187850 0.72 0.604121
Target:  5'- aCACaagaGUCUGUCCGACcACCAGGCCc -3'
miRNA:   3'- gGUGc---CAGGCGGGCUGaUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 93510 0.75 0.421877
Target:  5'- aCCcCGGacCCGCCUGGCUucCCGGACCAg -3'
miRNA:   3'- -GGuGCCa-GGCGGGCUGAu-GGUCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 114219 0.68 0.816492
Target:  5'- cUCACGGUCUGacaCCGGCcgcaguuuccgUGCCcgGGACCGc -3'
miRNA:   3'- -GGUGCCAGGCg--GGCUG-----------AUGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34247 0.68 0.824589
Target:  5'- cCCGCGGUCCGCCauggucagcgCGACa--CGGcGCCGu -3'
miRNA:   3'- -GGUGCCAGGCGG----------GCUGaugGUC-UGGU- -5'
15939 3' -58.6 NC_004065.1 + 63029 0.66 0.906228
Target:  5'- aCCACGGagagCUGUCCGGCgcgcgaggcgacgaUcCCGGACCu -3'
miRNA:   3'- -GGUGCCa---GGCGGGCUG--------------AuGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 83161 0.66 0.902096
Target:  5'- cCCGCGuUCaCGCgCCGAUgcagACCAGGCg- -3'
miRNA:   3'- -GGUGCcAG-GCG-GGCUGa---UGGUCUGgu -5'
15939 3' -58.6 NC_004065.1 + 195256 0.66 0.902096
Target:  5'- aCCGCGG-CCgcgaucugGCCCGGCgggaaACUgaGGGCCAg -3'
miRNA:   3'- -GGUGCCaGG--------CGGGCUGa----UGG--UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 67016 0.66 0.902096
Target:  5'- gUACGGgccCCGCgCgGGCaGCCAGugCAu -3'
miRNA:   3'- gGUGCCa--GGCG-GgCUGaUGGUCugGU- -5'
15939 3' -58.6 NC_004065.1 + 64649 0.66 0.896016
Target:  5'- aCCGCGcGUCCGCCguGCUgGCCgAGAUCu -3'
miRNA:   3'- -GGUGC-CAGGCGGgcUGA-UGG-UCUGGu -5'
15939 3' -58.6 NC_004065.1 + 46763 0.66 0.896016
Target:  5'- uCCA-GGUCC-CCCGAC-ACCccgaacuucAGACCGu -3'
miRNA:   3'- -GGUgCCAGGcGGGCUGaUGG---------UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 23725 0.66 0.896016
Target:  5'- gUCGCGGUCCGUCCGGuCcguCCGauccGAUCAc -3'
miRNA:   3'- -GGUGCCAGGCGGGCU-Gau-GGU----CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 222579 0.66 0.889732
Target:  5'- cCCAaGGUCuccuCGCCCG-CUGCCAcgauGGCCu -3'
miRNA:   3'- -GGUgCCAG----GCGGGCuGAUGGU----CUGGu -5'
15939 3' -58.6 NC_004065.1 + 192393 0.66 0.889732
Target:  5'- gUCACGGUgaUCGCUCGGgaUACCAGAUUc -3'
miRNA:   3'- -GGUGCCA--GGCGGGCUg-AUGGUCUGGu -5'
15939 3' -58.6 NC_004065.1 + 186179 0.66 0.889732
Target:  5'- uCCACGGcgucuccgcUCUGUCCGGCcAgCuGACCAa -3'
miRNA:   3'- -GGUGCC---------AGGCGGGCUGaUgGuCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 109889 0.67 0.883245
Target:  5'- gCCGCGG-CCGCgucggggggucCCGGCUcguccGCCGcGGCCGc -3'
miRNA:   3'- -GGUGCCaGGCG-----------GGCUGA-----UGGU-CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 34365 0.67 0.86261
Target:  5'- gCCACccuccgCCGCUCGGCUGCCGGGa-- -3'
miRNA:   3'- -GGUGcca---GGCGGGCUGAUGGUCUggu -5'
15939 3' -58.6 NC_004065.1 + 113490 0.67 0.854619
Target:  5'- uCCACGGUCgGCaCCGuacguCUcuuugacGCCgAGGCCGg -3'
miRNA:   3'- -GGUGCCAGgCG-GGCu----GA-------UGG-UCUGGU- -5'
15939 3' -58.6 NC_004065.1 + 111787 0.68 0.840309
Target:  5'- uCCACGcGUCCGUCgaCGGCU-CCGauGACCGc -3'
miRNA:   3'- -GGUGC-CAGGCGG--GCUGAuGGU--CUGGU- -5'
15939 3' -58.6 NC_004065.1 + 117177 0.68 0.832531
Target:  5'- aCGgGGUCCGCCCcuggggcaGGCguugcGCCAGGCa- -3'
miRNA:   3'- gGUgCCAGGCGGG--------CUGa----UGGUCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.