miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1594 3' -52.5 NC_001347.2 + 134389 0.66 0.99722
Target:  5'- cCCu--CCUCCAagAUGGCGCCGcucggccagacUCGUCGa -3'
miRNA:   3'- -GGucuGGAGGU--UGUUGUGGC-----------AGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 714 0.66 0.99722
Target:  5'- gCCaAGGCggcgCCAGCAcGCGCCGUgcaCGUCGc -3'
miRNA:   3'- -GG-UCUGga--GGUUGU-UGUGGCA---GCAGC- -5'
1594 3' -52.5 NC_001347.2 + 118217 0.66 0.99722
Target:  5'- gCCGcGuCCUCCAGCAAcCGCCGaagcacgCGcUCGg -3'
miRNA:   3'- -GGU-CuGGAGGUUGUU-GUGGCa------GC-AGC- -5'
1594 3' -52.5 NC_001347.2 + 30450 0.66 0.99722
Target:  5'- cUCGGGCCgaaccCCGuCAGCACCccgCGUCa -3'
miRNA:   3'- -GGUCUGGa----GGUuGUUGUGGca-GCAGc -5'
1594 3' -52.5 NC_001347.2 + 156844 0.66 0.99722
Target:  5'- --cGGCCUCUggAGgAGCACgugaGUCGUCGg -3'
miRNA:   3'- gguCUGGAGG--UUgUUGUGg---CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 85850 0.66 0.99722
Target:  5'- gCAGACCgaggCCGucGC-GCACCGgcucgCGUCc -3'
miRNA:   3'- gGUCUGGa---GGU--UGuUGUGGCa----GCAGc -5'
1594 3' -52.5 NC_001347.2 + 82473 0.66 0.99722
Target:  5'- uCUAGGCCgcgCCGACGcuCAUCGgCGUCc -3'
miRNA:   3'- -GGUCUGGa--GGUUGUu-GUGGCaGCAGc -5'
1594 3' -52.5 NC_001347.2 + 191797 0.66 0.99722
Target:  5'- gCAGGCgCUCUgccaguuggcgAGgGAUACCGUCGUgCGa -3'
miRNA:   3'- gGUCUG-GAGG-----------UUgUUGUGGCAGCA-GC- -5'
1594 3' -52.5 NC_001347.2 + 64190 0.66 0.997084
Target:  5'- aCCGGccgcaacuucuaccAUCUCCGuCGACGgUGUCGUCa -3'
miRNA:   3'- -GGUC--------------UGGAGGUuGUUGUgGCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 189897 0.66 0.996744
Target:  5'- gCCGGGCCgccUCGACcACGCCGaCGUa- -3'
miRNA:   3'- -GGUCUGGa--GGUUGuUGUGGCaGCAgc -5'
1594 3' -52.5 NC_001347.2 + 65356 0.66 0.996744
Target:  5'- gCCAcGCgUaCCAACcGCGCCGUgCGUCu -3'
miRNA:   3'- -GGUcUGgA-GGUUGuUGUGGCA-GCAGc -5'
1594 3' -52.5 NC_001347.2 + 4389 0.66 0.996744
Target:  5'- cCCGGGCuCUCCAucgggaGCggUACCGUUuUCc -3'
miRNA:   3'- -GGUCUG-GAGGU------UGuuGUGGCAGcAGc -5'
1594 3' -52.5 NC_001347.2 + 117408 0.66 0.996744
Target:  5'- -gGGAgCUCaccCAACACCGUCGcCa -3'
miRNA:   3'- ggUCUgGAGguuGUUGUGGCAGCaGc -5'
1594 3' -52.5 NC_001347.2 + 113919 0.66 0.996427
Target:  5'- aCCAGugCUCCAcuacgucccgcggcaACAGCAauUCGgccUCGUCc -3'
miRNA:   3'- -GGUCugGAGGU---------------UGUUGU--GGC---AGCAGc -5'
1594 3' -52.5 NC_001347.2 + 197723 0.66 0.996202
Target:  5'- cUCGGGCCUgCGacGCGACGCCGaCGg-- -3'
miRNA:   3'- -GGUCUGGAgGU--UGUUGUGGCaGCagc -5'
1594 3' -52.5 NC_001347.2 + 161935 0.66 0.996202
Target:  5'- uCCAGcgGCUuuUCCAuCAGCGCCuuggCGUCGg -3'
miRNA:   3'- -GGUC--UGG--AGGUuGUUGUGGca--GCAGC- -5'
1594 3' -52.5 NC_001347.2 + 158806 0.66 0.996144
Target:  5'- cCgGGACCcacgguggCCAACAagcgggacgaaaaACACCGUCacGUCGu -3'
miRNA:   3'- -GgUCUGGa-------GGUUGU-------------UGUGGCAG--CAGC- -5'
1594 3' -52.5 NC_001347.2 + 181225 0.66 0.995588
Target:  5'- gCUAcGACCccgCCAugGACGCCGUCu--- -3'
miRNA:   3'- -GGU-CUGGa--GGUugUUGUGGCAGcagc -5'
1594 3' -52.5 NC_001347.2 + 166001 0.66 0.994896
Target:  5'- cCCAgGACCUCCggUAcggacgucGCGCCuGcCGUUGa -3'
miRNA:   3'- -GGU-CUGGAGGuuGU--------UGUGG-CaGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 81032 0.66 0.994896
Target:  5'- cCCAGACCaaCAGC-ACGCCGggCG-CGc -3'
miRNA:   3'- -GGUCUGGagGUUGuUGUGGCa-GCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.