miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1594 3' -52.5 NC_001347.2 + 148102 0.66 0.994896
Target:  5'- aCCGuGACgUCgGGCAGCACCaaagacacGUCGUUa -3'
miRNA:   3'- -GGU-CUGgAGgUUGUUGUGG--------CAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 101245 0.66 0.994822
Target:  5'- gCAGguGCCgcguguggCCAGCGGCGCCGguuugcccacuagUCGUCa -3'
miRNA:   3'- gGUC--UGGa-------GGUUGUUGUGGC-------------AGCAGc -5'
1594 3' -52.5 NC_001347.2 + 97650 0.67 0.994118
Target:  5'- cCCGGcACgUCguACAGCucgucccuGCUGUCGUCGu -3'
miRNA:   3'- -GGUC-UGgAGguUGUUG--------UGGCAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 140000 0.67 0.993608
Target:  5'- uUCGGugCUCUAcCAGCAcaggcugguguaucuCCaGUCGUCGg -3'
miRNA:   3'- -GGUCugGAGGUuGUUGU---------------GG-CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 155233 0.67 0.992967
Target:  5'- cUCGGugCUCCAGCcGCuguaacgcgaaacgGCCuGUCGUUGc -3'
miRNA:   3'- -GGUCugGAGGUUGuUG--------------UGG-CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 37503 0.67 0.992277
Target:  5'- --uGGCCUUCAGCAGuCugCGUUGUUu -3'
miRNA:   3'- gguCUGGAGGUUGUU-GugGCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 193725 0.67 0.992277
Target:  5'- gCuGGCCUgCGAgGACACCGcCGcUCGu -3'
miRNA:   3'- gGuCUGGAgGUUgUUGUGGCaGC-AGC- -5'
1594 3' -52.5 NC_001347.2 + 117345 0.67 0.990736
Target:  5'- aCgGGGCCUUCccaAGCGGCAaucucacgacucaCGUCGUCGg -3'
miRNA:   3'- -GgUCUGGAGG---UUGUUGUg------------GCAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 87669 0.67 0.990005
Target:  5'- aUCAGGCCcgacauccagaCCGugAGCACCGUC-UCGc -3'
miRNA:   3'- -GGUCUGGa----------GGUugUUGUGGCAGcAGC- -5'
1594 3' -52.5 NC_001347.2 + 197129 0.68 0.988688
Target:  5'- gCUGGAaCUCgGGCc-CGCCGUCGUCGc -3'
miRNA:   3'- -GGUCUgGAGgUUGuuGUGGCAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 100565 0.68 0.987088
Target:  5'- aCCAGAuguucaccguggcCCUCC-ACuuCACCGUCG-Ca -3'
miRNA:   3'- -GGUCU-------------GGAGGuUGuuGUGGCAGCaGc -5'
1594 3' -52.5 NC_001347.2 + 143164 0.68 0.985653
Target:  5'- gCCAGACCg--GACGACAgCGUC-UCGu -3'
miRNA:   3'- -GGUCUGGaggUUGUUGUgGCAGcAGC- -5'
1594 3' -52.5 NC_001347.2 + 174271 0.68 0.985487
Target:  5'- uCCGcGGCCcguuucgacgaaaUCCGGCGGCGCCGUCa--- -3'
miRNA:   3'- -GGU-CUGG-------------AGGUUGUUGUGGCAGcagc -5'
1594 3' -52.5 NC_001347.2 + 172572 0.68 0.982032
Target:  5'- gCCGGGCgUCUucGCAGCGuucCCGgUCGUCGu -3'
miRNA:   3'- -GGUCUGgAGGu-UGUUGU---GGC-AGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 203441 0.68 0.981835
Target:  5'- gCCGGAUCUgCCGAuggagauCGACAUCGUCaUCGa -3'
miRNA:   3'- -GGUCUGGA-GGUU-------GUUGUGGCAGcAGC- -5'
1594 3' -52.5 NC_001347.2 + 80388 0.68 0.979983
Target:  5'- cCCAGACCUCCAcGCAA-GCCGUg---- -3'
miRNA:   3'- -GGUCUGGAGGU-UGUUgUGGCAgcagc -5'
1594 3' -52.5 NC_001347.2 + 78355 0.69 0.976349
Target:  5'- gCGGACCcggcguggugggacCCGGCGGCGCCGUgGUgGg -3'
miRNA:   3'- gGUCUGGa-------------GGUUGUUGUGGCAgCAgC- -5'
1594 3' -52.5 NC_001347.2 + 97982 0.69 0.970024
Target:  5'- aCCGuACCgucgUCCAuuaACAACGCCG-CGUCGu -3'
miRNA:   3'- -GGUcUGG----AGGU---UGUUGUGGCaGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 85333 0.69 0.970024
Target:  5'- aUCAGcGCCgCCGcCAGCGCCGUCGcccgCGg -3'
miRNA:   3'- -GGUC-UGGaGGUuGUUGUGGCAGCa---GC- -5'
1594 3' -52.5 NC_001347.2 + 81522 0.69 0.968271
Target:  5'- gCuGACUUCC-ACGACguuguuuucaccgucGCCGUCGUCa -3'
miRNA:   3'- gGuCUGGAGGuUGUUG---------------UGGCAGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.