miRNA display CGI


Results 41 - 60 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1594 3' -52.5 NC_001347.2 + 155233 0.67 0.992967
Target:  5'- cUCGGugCUCCAGCcGCuguaacgcgaaacgGCCuGUCGUUGc -3'
miRNA:   3'- -GGUCugGAGGUUGuUG--------------UGG-CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 156844 0.66 0.99722
Target:  5'- --cGGCCUCUggAGgAGCACgugaGUCGUCGg -3'
miRNA:   3'- gguCUGGAGG--UUgUUGUGg---CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 158806 0.66 0.996144
Target:  5'- cCgGGACCcacgguggCCAACAagcgggacgaaaaACACCGUCacGUCGu -3'
miRNA:   3'- -GgUCUGGa-------GGUUGU-------------UGUGGCAG--CAGC- -5'
1594 3' -52.5 NC_001347.2 + 161935 0.66 0.996202
Target:  5'- uCCAGcgGCUuuUCCAuCAGCGCCuuggCGUCGg -3'
miRNA:   3'- -GGUC--UGG--AGGUuGUUGUGGca--GCAGC- -5'
1594 3' -52.5 NC_001347.2 + 166001 0.66 0.994896
Target:  5'- cCCAgGACCUCCggUAcggacgucGCGCCuGcCGUUGa -3'
miRNA:   3'- -GGU-CUGGAGGuuGU--------UGUGG-CaGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 167954 0.7 0.963897
Target:  5'- aCCGGGCUUCUggU--CGCCGUCGauaUCGg -3'
miRNA:   3'- -GGUCUGGAGGuuGuuGUGGCAGC---AGC- -5'
1594 3' -52.5 NC_001347.2 + 172572 0.68 0.982032
Target:  5'- gCCGGGCgUCUucGCAGCGuucCCGgUCGUCGu -3'
miRNA:   3'- -GGUCUGgAGGu-UGUUGU---GGC-AGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 174271 0.68 0.985487
Target:  5'- uCCGcGGCCcguuucgacgaaaUCCGGCGGCGCCGUCa--- -3'
miRNA:   3'- -GGU-CUGG-------------AGGUUGUUGUGGCAGcagc -5'
1594 3' -52.5 NC_001347.2 + 175028 0.69 0.968271
Target:  5'- cCUGGACauCUCCAuacuggugaacgagaGCGGCGCCGUCuUCGg -3'
miRNA:   3'- -GGUCUG--GAGGU---------------UGUUGUGGCAGcAGC- -5'
1594 3' -52.5 NC_001347.2 + 175847 0.73 0.883276
Target:  5'- gCCGcACCgCCAACAGCACCGccggcuaCGUCGa -3'
miRNA:   3'- -GGUcUGGaGGUUGUUGUGGCa------GCAGC- -5'
1594 3' -52.5 NC_001347.2 + 176485 1.1 0.009713
Target:  5'- gCCAGACCUCCAACAACACCGUCGUCGc -3'
miRNA:   3'- -GGUCUGGAGGUUGUUGUGGCAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 181225 0.66 0.995588
Target:  5'- gCUAcGACCccgCCAugGACGCCGUCu--- -3'
miRNA:   3'- -GGU-CUGGa--GGUugUUGUGGCAGcagc -5'
1594 3' -52.5 NC_001347.2 + 182888 0.7 0.953147
Target:  5'- gCUGGGCCUCgcGCGGCucGCCGUCGUUc -3'
miRNA:   3'- -GGUCUGGAGguUGUUG--UGGCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 188976 0.76 0.750694
Target:  5'- cCCuGGgCUCCGACGGCGCCGUUGccCGg -3'
miRNA:   3'- -GGuCUgGAGGUUGUUGUGGCAGCa-GC- -5'
1594 3' -52.5 NC_001347.2 + 189282 0.72 0.914683
Target:  5'- gUCAG-CCUgggaCAcACAACACCGUCGUCc -3'
miRNA:   3'- -GGUCuGGAg---GU-UGUUGUGGCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 189897 0.66 0.996744
Target:  5'- gCCGGGCCgccUCGACcACGCCGaCGUa- -3'
miRNA:   3'- -GGUCUGGa--GGUUGuUGUGGCaGCAgc -5'
1594 3' -52.5 NC_001347.2 + 191797 0.66 0.99722
Target:  5'- gCAGGCgCUCUgccaguuggcgAGgGAUACCGUCGUgCGa -3'
miRNA:   3'- gGUCUG-GAGG-----------UUgUUGUGGCAGCA-GC- -5'
1594 3' -52.5 NC_001347.2 + 193725 0.67 0.992277
Target:  5'- gCuGGCCUgCGAgGACACCGcCGcUCGu -3'
miRNA:   3'- gGuCUGGAgGUUgUUGUGGCaGC-AGC- -5'
1594 3' -52.5 NC_001347.2 + 197129 0.68 0.988688
Target:  5'- gCUGGAaCUCgGGCc-CGCCGUCGUCGc -3'
miRNA:   3'- -GGUCUgGAGgUUGuuGUGGCAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 197723 0.66 0.996202
Target:  5'- cUCGGGCCUgCGacGCGACGCCGaCGg-- -3'
miRNA:   3'- -GGUCUGGAgGU--UGUUGUGGCaGCagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.