miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1594 3' -52.5 NC_001347.2 + 158806 0.66 0.996144
Target:  5'- cCgGGACCcacgguggCCAACAagcgggacgaaaaACACCGUCacGUCGu -3'
miRNA:   3'- -GgUCUGGa-------GGUUGU-------------UGUGGCAG--CAGC- -5'
1594 3' -52.5 NC_001347.2 + 156844 0.66 0.99722
Target:  5'- --cGGCCUCUggAGgAGCACgugaGUCGUCGg -3'
miRNA:   3'- gguCUGGAGG--UUgUUGUGg---CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 155233 0.67 0.992967
Target:  5'- cUCGGugCUCCAGCcGCuguaacgcgaaacgGCCuGUCGUUGc -3'
miRNA:   3'- -GGUCugGAGGUUGuUG--------------UGG-CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 148102 0.66 0.994896
Target:  5'- aCCGuGACgUCgGGCAGCACCaaagacacGUCGUUa -3'
miRNA:   3'- -GGU-CUGgAGgUUGUUGUGG--------CAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 143164 0.68 0.985653
Target:  5'- gCCAGACCg--GACGACAgCGUC-UCGu -3'
miRNA:   3'- -GGUCUGGaggUUGUUGUgGCAGcAGC- -5'
1594 3' -52.5 NC_001347.2 + 140000 0.67 0.993608
Target:  5'- uUCGGugCUCUAcCAGCAcaggcugguguaucuCCaGUCGUCGg -3'
miRNA:   3'- -GGUCugGAGGUuGUUGU---------------GG-CAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 134389 0.66 0.99722
Target:  5'- cCCu--CCUCCAagAUGGCGCCGcucggccagacUCGUCGa -3'
miRNA:   3'- -GGucuGGAGGU--UGUUGUGGC-----------AGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 130690 0.74 0.830521
Target:  5'- aCGGAUCgacaCGGgGACACCGUCGUCu -3'
miRNA:   3'- gGUCUGGag--GUUgUUGUGGCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 128313 0.74 0.838629
Target:  5'- aCGGACUUgCAGCGGC-UCGUCGUCa -3'
miRNA:   3'- gGUCUGGAgGUUGUUGuGGCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 119293 0.8 0.514416
Target:  5'- aCAGcaGCCUCCGuaACAGCACgGUCGUCa -3'
miRNA:   3'- gGUC--UGGAGGU--UGUUGUGgCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 118217 0.66 0.99722
Target:  5'- gCCGcGuCCUCCAGCAAcCGCCGaagcacgCGcUCGg -3'
miRNA:   3'- -GGU-CuGGAGGUUGUU-GUGGCa------GC-AGC- -5'
1594 3' -52.5 NC_001347.2 + 117408 0.66 0.996744
Target:  5'- -gGGAgCUCaccCAACACCGUCGcCa -3'
miRNA:   3'- ggUCUgGAGguuGUUGUGGCAGCaGc -5'
1594 3' -52.5 NC_001347.2 + 117345 0.67 0.990736
Target:  5'- aCgGGGCCUUCccaAGCGGCAaucucacgacucaCGUCGUCGg -3'
miRNA:   3'- -GgUCUGGAGG---UUGUUGUg------------GCAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 113919 0.66 0.996427
Target:  5'- aCCAGugCUCCAcuacgucccgcggcaACAGCAauUCGgccUCGUCc -3'
miRNA:   3'- -GGUCugGAGGU---------------UGUUGU--GGC---AGCAGc -5'
1594 3' -52.5 NC_001347.2 + 107248 0.71 0.935736
Target:  5'- gCCGGACCU-----GACGCUGUCGUCa -3'
miRNA:   3'- -GGUCUGGAgguugUUGUGGCAGCAGc -5'
1594 3' -52.5 NC_001347.2 + 101245 0.66 0.994822
Target:  5'- gCAGguGCCgcguguggCCAGCGGCGCCGguuugcccacuagUCGUCa -3'
miRNA:   3'- gGUC--UGGa-------GGUUGUUGUGGC-------------AGCAGc -5'
1594 3' -52.5 NC_001347.2 + 100565 0.68 0.987088
Target:  5'- aCCAGAuguucaccguggcCCUCC-ACuuCACCGUCG-Ca -3'
miRNA:   3'- -GGUCU-------------GGAGGuUGuuGUGGCAGCaGc -5'
1594 3' -52.5 NC_001347.2 + 97982 0.69 0.970024
Target:  5'- aCCGuACCgucgUCCAuuaACAACGCCG-CGUCGu -3'
miRNA:   3'- -GGUcUGG----AGGU---UGUUGUGGCaGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 97650 0.67 0.994118
Target:  5'- cCCGGcACgUCguACAGCucgucccuGCUGUCGUCGu -3'
miRNA:   3'- -GGUC-UGgAGguUGUUG--------UGGCAGCAGC- -5'
1594 3' -52.5 NC_001347.2 + 96922 0.69 0.967062
Target:  5'- cCCGGGCCgccgCCAGCGuccgcgccugcACGCCGcCGUg- -3'
miRNA:   3'- -GGUCUGGa---GGUUGU-----------UGUGGCaGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.