Results 61 - 63 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1594 | 3' | -52.5 | NC_001347.2 | + | 4389 | 0.66 | 0.996744 |
Target: 5'- cCCGGGCuCUCCAucgggaGCggUACCGUUuUCc -3' miRNA: 3'- -GGUCUG-GAGGU------UGuuGUGGCAGcAGc -5' |
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1594 | 3' | -52.5 | NC_001347.2 | + | 3316 | 0.69 | 0.967062 |
Target: 5'- aCCAGACaUCCAAUuACACCGaUGUgGa -3' miRNA: 3'- -GGUCUGgAGGUUGuUGUGGCaGCAgC- -5' |
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1594 | 3' | -52.5 | NC_001347.2 | + | 714 | 0.66 | 0.99722 |
Target: 5'- gCCaAGGCggcgCCAGCAcGCGCCGUgcaCGUCGc -3' miRNA: 3'- -GG-UCUGga--GGUUGU-UGUGGCA---GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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