miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1594 5' -45.1 NC_001347.2 + 23712 0.66 1
Target:  5'- cGUCGAUGGCAgGUcaucgucacgcUGUuugUGAUCGgcGUu -3'
miRNA:   3'- -CGGCUAUUGUgCA-----------ACA---ACUAGCuuCA- -5'
1594 5' -45.1 NC_001347.2 + 1372 0.66 1
Target:  5'- cGCCGcggGACGCGUg---GAUCGuacuGGUg -3'
miRNA:   3'- -CGGCua-UUGUGCAacaaCUAGCu---UCA- -5'
1594 5' -45.1 NC_001347.2 + 134062 0.66 1
Target:  5'- --aGAUAugGCGUUGUUGAgCGGuuGUg -3'
miRNA:   3'- cggCUAUugUGCAACAACUaGCUu-CA- -5'
1594 5' -45.1 NC_001347.2 + 18746 0.66 1
Target:  5'- cGCgGAUuGCGCGgcgagUGUcGGUUGGAGg -3'
miRNA:   3'- -CGgCUAuUGUGCa----ACAaCUAGCUUCa -5'
1594 5' -45.1 NC_001347.2 + 141831 0.68 0.99999
Target:  5'- gGCCGccacuGUGGCGCGUgaaucGUUGGUaCGGAGc -3'
miRNA:   3'- -CGGC-----UAUUGUGCAa----CAACUA-GCUUCa -5'
1594 5' -45.1 NC_001347.2 + 152684 0.69 0.999987
Target:  5'- cGCUGAUAACGCGUggucgcgcacgaUGUUGAgcgUGAc-- -3'
miRNA:   3'- -CGGCUAUUGUGCA------------ACAACUa--GCUuca -5'
1594 5' -45.1 NC_001347.2 + 64903 0.7 0.999892
Target:  5'- cCCGAacUAACGCGUcgaugccUGUUGggUGAGGUg -3'
miRNA:   3'- cGGCU--AUUGUGCA-------ACAACuaGCUUCA- -5'
1594 5' -45.1 NC_001347.2 + 42857 0.7 0.999864
Target:  5'- uCCGAUGAUgAUGUUGUuauUGAUCGAAu- -3'
miRNA:   3'- cGGCUAUUG-UGCAACA---ACUAGCUUca -5'
1594 5' -45.1 NC_001347.2 + 147906 0.73 0.998716
Target:  5'- gGCCGuggGUGGCGCGgUGgccuccgUGGUCGAAGg -3'
miRNA:   3'- -CGGC---UAUUGUGCaACa------ACUAGCUUCa -5'
1594 5' -45.1 NC_001347.2 + 143735 0.78 0.966745
Target:  5'- cGCCGGUGGCGCGUcaggaagUGUacGUCGAAGg -3'
miRNA:   3'- -CGGCUAUUGUGCA-------ACAacUAGCUUCa -5'
1594 5' -45.1 NC_001347.2 + 176528 1.12 0.038214
Target:  5'- uGCCGAUAACACGUUGUUGAUCGAAGUg -3'
miRNA:   3'- -CGGCUAUUGUGCAACAACUAGCUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.