Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1594 | 5' | -45.1 | NC_001347.2 | + | 23712 | 0.66 | 1 |
Target: 5'- cGUCGAUGGCAgGUcaucgucacgcUGUuugUGAUCGgcGUu -3' miRNA: 3'- -CGGCUAUUGUgCA-----------ACA---ACUAGCuuCA- -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 147906 | 0.73 | 0.998716 |
Target: 5'- gGCCGuggGUGGCGCGgUGgccuccgUGGUCGAAGg -3' miRNA: 3'- -CGGC---UAUUGUGCaACa------ACUAGCUUCa -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 143735 | 0.78 | 0.966745 |
Target: 5'- cGCCGGUGGCGCGUcaggaagUGUacGUCGAAGg -3' miRNA: 3'- -CGGCUAUUGUGCA-------ACAacUAGCUUCa -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 42857 | 0.7 | 0.999864 |
Target: 5'- uCCGAUGAUgAUGUUGUuauUGAUCGAAu- -3' miRNA: 3'- cGGCUAUUG-UGCAACA---ACUAGCUUca -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 141831 | 0.68 | 0.99999 |
Target: 5'- gGCCGccacuGUGGCGCGUgaaucGUUGGUaCGGAGc -3' miRNA: 3'- -CGGC-----UAUUGUGCAa----CAACUA-GCUUCa -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 152684 | 0.69 | 0.999987 |
Target: 5'- cGCUGAUAACGCGUggucgcgcacgaUGUUGAgcgUGAc-- -3' miRNA: 3'- -CGGCUAUUGUGCA------------ACAACUa--GCUuca -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 64903 | 0.7 | 0.999892 |
Target: 5'- cCCGAacUAACGCGUcgaugccUGUUGggUGAGGUg -3' miRNA: 3'- cGGCU--AUUGUGCA-------ACAACuaGCUUCA- -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 18746 | 0.66 | 1 |
Target: 5'- cGCgGAUuGCGCGgcgagUGUcGGUUGGAGg -3' miRNA: 3'- -CGgCUAuUGUGCa----ACAaCUAGCUUCa -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 134062 | 0.66 | 1 |
Target: 5'- --aGAUAugGCGUUGUUGAgCGGuuGUg -3' miRNA: 3'- cggCUAUugUGCAACAACUaGCUu-CA- -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 1372 | 0.66 | 1 |
Target: 5'- cGCCGcggGACGCGUg---GAUCGuacuGGUg -3' miRNA: 3'- -CGGCua-UUGUGCAacaaCUAGCu---UCA- -5' |
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1594 | 5' | -45.1 | NC_001347.2 | + | 176528 | 1.12 | 0.038214 |
Target: 5'- uGCCGAUAACACGUUGUUGAUCGAAGUg -3' miRNA: 3'- -CGGCUAUUGUGCAACAACUAGCUUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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