miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15944 3' -52.7 NC_004065.1 + 141930 0.66 0.996004
Target:  5'- gCGGuguCUGuauCGCCGUucggGGUugUCUGUGCg -3'
miRNA:   3'- gGCUuu-GACu--GCGGCG----UCA--AGACGCG- -5'
15944 3' -52.7 NC_004065.1 + 97488 0.66 0.996004
Target:  5'- cCCGGAG----UGCCGCAGcgaUCUGCGg -3'
miRNA:   3'- -GGCUUUgacuGCGGCGUCa--AGACGCg -5'
15944 3' -52.7 NC_004065.1 + 201005 0.66 0.996004
Target:  5'- gCCGGucuGACUcGAgGCCGCG----UGCGCg -3'
miRNA:   3'- -GGCU---UUGA-CUgCGGCGUcaagACGCG- -5'
15944 3' -52.7 NC_004065.1 + 83143 0.66 0.996004
Target:  5'- cCCGAAucgucACUGcCGcCCGC-GUUCacGCGCc -3'
miRNA:   3'- -GGCUU-----UGACuGC-GGCGuCAAGa-CGCG- -5'
15944 3' -52.7 NC_004065.1 + 126854 0.66 0.996004
Target:  5'- cCCGAccGugUGGCGCCccaacucacugGCGGUgCUaCGCg -3'
miRNA:   3'- -GGCU--UugACUGCGG-----------CGUCAaGAcGCG- -5'
15944 3' -52.7 NC_004065.1 + 130429 0.66 0.996004
Target:  5'- gCGGAAUUcgUGCUGCAGcagCUGUGCc -3'
miRNA:   3'- gGCUUUGAcuGCGGCGUCaa-GACGCG- -5'
15944 3' -52.7 NC_004065.1 + 171698 0.66 0.996004
Target:  5'- aCuAAGCUGGC-CUGCAcg-CUGCGCg -3'
miRNA:   3'- gGcUUUGACUGcGGCGUcaaGACGCG- -5'
15944 3' -52.7 NC_004065.1 + 96845 0.66 0.995944
Target:  5'- uUCGAGacggcgcGCUGuCGCCGCGggcgccGUUCUG-GCc -3'
miRNA:   3'- -GGCUU-------UGACuGCGGCGU------CAAGACgCG- -5'
15944 3' -52.7 NC_004065.1 + 35120 0.66 0.995361
Target:  5'- aUCGAGACggcGGCGCCGUGGUcUCgaUGC-Cg -3'
miRNA:   3'- -GGCUUUGa--CUGCGGCGUCA-AG--ACGcG- -5'
15944 3' -52.7 NC_004065.1 + 85038 0.66 0.995361
Target:  5'- gCGAuccaccauCUGACGCCGCAgcuGUUCcuggaccccGUGCa -3'
miRNA:   3'- gGCUuu------GACUGCGGCGU---CAAGa--------CGCG- -5'
15944 3' -52.7 NC_004065.1 + 104604 0.66 0.995361
Target:  5'- cCCGAGgcGCUGGCGCCGgccgacuucCAcGacCUGCGg -3'
miRNA:   3'- -GGCUU--UGACUGCGGC---------GU-CaaGACGCg -5'
15944 3' -52.7 NC_004065.1 + 166141 0.66 0.995361
Target:  5'- -aGAGACgucGGCGCCGgCGGcagCgGCGCc -3'
miRNA:   3'- ggCUUUGa--CUGCGGC-GUCaa-GaCGCG- -5'
15944 3' -52.7 NC_004065.1 + 114990 0.66 0.995361
Target:  5'- cUCGGccCUGGCgGCCGCgcGGaUCUGCGa -3'
miRNA:   3'- -GGCUuuGACUG-CGGCG--UCaAGACGCg -5'
15944 3' -52.7 NC_004065.1 + 133028 0.66 0.995361
Target:  5'- gCGGcAGCaGACGUCGCAGca--GCGCg -3'
miRNA:   3'- gGCU-UUGaCUGCGGCGUCaagaCGCG- -5'
15944 3' -52.7 NC_004065.1 + 229159 0.66 0.994635
Target:  5'- gCGggGCgcccuCGCCcgGCAGUcaUGCGCu -3'
miRNA:   3'- gGCuuUGacu--GCGG--CGUCAagACGCG- -5'
15944 3' -52.7 NC_004065.1 + 28667 0.66 0.994635
Target:  5'- gCGAGGCgcagcucGCGCaGCAGUUC-GCGUg -3'
miRNA:   3'- gGCUUUGac-----UGCGgCGUCAAGaCGCG- -5'
15944 3' -52.7 NC_004065.1 + 163877 0.66 0.994635
Target:  5'- cUCGGccAGCUGGCGCCgguccGCGGccCaGCGCg -3'
miRNA:   3'- -GGCU--UUGACUGCGG-----CGUCaaGaCGCG- -5'
15944 3' -52.7 NC_004065.1 + 219242 0.66 0.994635
Target:  5'- uUCGGAGCUGgagcacGCGCCGcCGGUguaaCU-CGCg -3'
miRNA:   3'- -GGCUUUGAC------UGCGGC-GUCAa---GAcGCG- -5'
15944 3' -52.7 NC_004065.1 + 67497 0.66 0.994635
Target:  5'- aCCGAGGCgaucucGGCGCUGUcGUUCUucgGgGCc -3'
miRNA:   3'- -GGCUUUGa-----CUGCGGCGuCAAGA---CgCG- -5'
15944 3' -52.7 NC_004065.1 + 119620 0.66 0.99448
Target:  5'- gCGGAGgaGACGCCGUcggccguggcguGUUCgaacggccUGCGCg -3'
miRNA:   3'- gGCUUUgaCUGCGGCGu-----------CAAG--------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.