miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15944 5' -54.6 NC_004065.1 + 211682 0.66 0.973257
Target:  5'- cGAGGGgGAGCCGucGAACGauCAGAagAGAu -3'
miRNA:   3'- -CUCCCgCUCGGU--CUUGUc-GUCUa-UCU- -5'
15944 5' -54.6 NC_004065.1 + 148621 0.66 0.970474
Target:  5'- cGAGGGaCGGGcCCGGGugGGCAaGUAc- -3'
miRNA:   3'- -CUCCC-GCUC-GGUCUugUCGUcUAUcu -5'
15944 5' -54.6 NC_004065.1 + 75793 0.66 0.970474
Target:  5'- --cGGCGAGggGGAGCGGCGGcgAGGc -3'
miRNA:   3'- cucCCGCUCggUCUUGUCGUCuaUCU- -5'
15944 5' -54.6 NC_004065.1 + 75851 0.66 0.970474
Target:  5'- cGAcGGCGAGCCAGcAACAGCc------ -3'
miRNA:   3'- -CUcCCGCUCGGUC-UUGUCGucuaucu -5'
15944 5' -54.6 NC_004065.1 + 23607 0.66 0.96749
Target:  5'- aGGcGGUGAGgCGGGcaGGCGGGUGGAc -3'
miRNA:   3'- cUC-CCGCUCgGUCUugUCGUCUAUCU- -5'
15944 5' -54.6 NC_004065.1 + 99931 0.66 0.96749
Target:  5'- aAGGGCGGGCgCcGAACGGCAucgccGUAGu -3'
miRNA:   3'- cUCCCGCUCG-GuCUUGUCGUc----UAUCu -5'
15944 5' -54.6 NC_004065.1 + 205378 0.66 0.96749
Target:  5'- cGAGGGUc-GCCAGAACAcCAGAUc-- -3'
miRNA:   3'- -CUCCCGcuCGGUCUUGUcGUCUAucu -5'
15944 5' -54.6 NC_004065.1 + 211164 0.66 0.964298
Target:  5'- -cGGGCGuGCCGGGAugucgcacucguCAGUcGGUGGGg -3'
miRNA:   3'- cuCCCGCuCGGUCUU------------GUCGuCUAUCU- -5'
15944 5' -54.6 NC_004065.1 + 98853 0.66 0.964298
Target:  5'- aGGGGGuCGGucauauccagacGCCGcucuacGGGCGGCAGGUAGGc -3'
miRNA:   3'- -CUCCC-GCU------------CGGU------CUUGUCGUCUAUCU- -5'
15944 5' -54.6 NC_004065.1 + 89668 0.66 0.964297
Target:  5'- aGGGGCGucGuCCcGAACGcgccGCAGAUGGAc -3'
miRNA:   3'- cUCCCGCu-C-GGuCUUGU----CGUCUAUCU- -5'
15944 5' -54.6 NC_004065.1 + 124977 0.66 0.964297
Target:  5'- aAGGGCG-GCCAGAGgcGCGGGUc-- -3'
miRNA:   3'- cUCCCGCuCGGUCUUguCGUCUAucu -5'
15944 5' -54.6 NC_004065.1 + 190464 0.66 0.963967
Target:  5'- cGGGGUucucgcggacgaaGAcGuCCAGGACAGCAGAUAc- -3'
miRNA:   3'- cUCCCG-------------CU-C-GGUCUUGUCGUCUAUcu -5'
15944 5' -54.6 NC_004065.1 + 214494 0.66 0.960892
Target:  5'- --aGGCGGGUgCGGGACGGUcGGUGGAa -3'
miRNA:   3'- cucCCGCUCG-GUCUUGUCGuCUAUCU- -5'
15944 5' -54.6 NC_004065.1 + 137031 0.66 0.960892
Target:  5'- uGAGGacCGAGCCcuGGCAGCucuugaAGAUAGAa -3'
miRNA:   3'- -CUCCc-GCUCGGucUUGUCG------UCUAUCU- -5'
15944 5' -54.6 NC_004065.1 + 174869 0.66 0.960892
Target:  5'- cGGGGagaagaGGGCCgGGAACGGCGGuucccuuccGUAGAu -3'
miRNA:   3'- cUCCCg-----CUCGG-UCUUGUCGUC---------UAUCU- -5'
15944 5' -54.6 NC_004065.1 + 95044 0.67 0.957269
Target:  5'- cGGGGUGGGCUGGggUGGgGGuugGGAa -3'
miRNA:   3'- cUCCCGCUCGGUCuuGUCgUCua-UCU- -5'
15944 5' -54.6 NC_004065.1 + 98240 0.67 0.957269
Target:  5'- cGAGGGUGccgacgacGGCuCGGGACGGCGGcccUGGGc -3'
miRNA:   3'- -CUCCCGC--------UCG-GUCUUGUCGUCu--AUCU- -5'
15944 5' -54.6 NC_004065.1 + 1929 0.67 0.953423
Target:  5'- gGAGcGGCGGGCCAccGAAagaGGUAGGUGc- -3'
miRNA:   3'- -CUC-CCGCUCGGU--CUUg--UCGUCUAUcu -5'
15944 5' -54.6 NC_004065.1 + 51147 0.67 0.953423
Target:  5'- cAGGGgGAGCaguaGGAgugaagacaGCAGCAGGUAc- -3'
miRNA:   3'- cUCCCgCUCGg---UCU---------UGUCGUCUAUcu -5'
15944 5' -54.6 NC_004065.1 + 93340 0.67 0.953423
Target:  5'- gGAaGGCGAGCC-GAucGCAGCAGGcGGu -3'
miRNA:   3'- -CUcCCGCUCGGuCU--UGUCGUCUaUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.