miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15946 5' -54.1 NC_004065.1 + 131260 0.65 0.987363
Target:  5'- -gGCGGCGGaCGuucugcgcgccuucUCCCUCcGGGGGUUGg -3'
miRNA:   3'- caUGCUGCC-GU--------------AGGGGGuUUCCUAGC- -5'
15946 5' -54.1 NC_004065.1 + 34333 0.66 0.986904
Target:  5'- aUACGGCGGCGuggacgagaggagccUuCCCCCGAucAGG-UCa -3'
miRNA:   3'- cAUGCUGCCGU---------------A-GGGGGUU--UCCuAGc -5'
15946 5' -54.1 NC_004065.1 + 72977 0.66 0.986272
Target:  5'- -gACGauGCGGaugAUCCCCCAcGAGGA-CGa -3'
miRNA:   3'- caUGC--UGCCg--UAGGGGGU-UUCCUaGC- -5'
15946 5' -54.1 NC_004065.1 + 131492 0.66 0.986272
Target:  5'- -gACgGGCGGCGUCUCCCGAcgu-UCGa -3'
miRNA:   3'- caUG-CUGCCGUAGGGGGUUuccuAGC- -5'
15946 5' -54.1 NC_004065.1 + 65336 0.66 0.986272
Target:  5'- -gGCGGCGGCAgcagCUgCgGGuGGGUCGg -3'
miRNA:   3'- caUGCUGCCGUa---GGgGgUUuCCUAGC- -5'
15946 5' -54.1 NC_004065.1 + 229590 0.66 0.98459
Target:  5'- -cGCGAgGGCGg-CUCCAGGGGGUUc -3'
miRNA:   3'- caUGCUgCCGUagGGGGUUUCCUAGc -5'
15946 5' -54.1 NC_004065.1 + 35790 0.66 0.98459
Target:  5'- -gGCGAagaGGCAgcugacccaUCCCgCCAAAgGGAUCc -3'
miRNA:   3'- caUGCUg--CCGU---------AGGG-GGUUU-CCUAGc -5'
15946 5' -54.1 NC_004065.1 + 77988 0.66 0.98459
Target:  5'- -cGCGGCGaGCcgCCCCgggaCGGAGGAgccguUCGa -3'
miRNA:   3'- caUGCUGC-CGuaGGGG----GUUUCCU-----AGC- -5'
15946 5' -54.1 NC_004065.1 + 149061 0.66 0.98459
Target:  5'- -gGCGGCGGCAgg--CCGAucGGGGUCGu -3'
miRNA:   3'- caUGCUGCCGUagggGGUU--UCCUAGC- -5'
15946 5' -54.1 NC_004065.1 + 119838 0.66 0.98459
Target:  5'- -gGCGGCGGCGcgucgcggCCgCCgCAGAGG-UCGg -3'
miRNA:   3'- caUGCUGCCGUa-------GG-GG-GUUUCCuAGC- -5'
15946 5' -54.1 NC_004065.1 + 203696 0.66 0.98459
Target:  5'- -gACGACGaCGUCguCUCCGGGGGGUCc -3'
miRNA:   3'- caUGCUGCcGUAG--GGGGUUUCCUAGc -5'
15946 5' -54.1 NC_004065.1 + 112681 0.66 0.98459
Target:  5'- --cUGACGGCGgaCCCCGAcaagccGGGGUCc -3'
miRNA:   3'- cauGCUGCCGUagGGGGUU------UCCUAGc -5'
15946 5' -54.1 NC_004065.1 + 79603 0.66 0.98459
Target:  5'- -aGgGAgGGCG-CCCCC--GGGAUCa -3'
miRNA:   3'- caUgCUgCCGUaGGGGGuuUCCUAGc -5'
15946 5' -54.1 NC_004065.1 + 184224 0.66 0.978601
Target:  5'- -cACG-CGGCGUguggcgccagCCCCCGAuGGAUgGg -3'
miRNA:   3'- caUGCuGCCGUA----------GGGGGUUuCCUAgC- -5'
15946 5' -54.1 NC_004065.1 + 189637 0.66 0.978601
Target:  5'- -gAUGACGGCGgaggaCCCGGAGGAcaugacgacgagUCGg -3'
miRNA:   3'- caUGCUGCCGUagg--GGGUUUCCU------------AGC- -5'
15946 5' -54.1 NC_004065.1 + 201898 0.66 0.978601
Target:  5'- --cCGAUGGCGUCCCagAccGGGUCu -3'
miRNA:   3'- cauGCUGCCGUAGGGggUuuCCUAGc -5'
15946 5' -54.1 NC_004065.1 + 229324 0.66 0.978601
Target:  5'- uUACGACgGGCAUCUcgaaaCCCGGGcGGUCGc -3'
miRNA:   3'- cAUGCUG-CCGUAGG-----GGGUUUcCUAGC- -5'
15946 5' -54.1 NC_004065.1 + 207268 0.66 0.978601
Target:  5'- ---aGAC-GCAUCCUCCGGGGuGAUCa -3'
miRNA:   3'- caugCUGcCGUAGGGGGUUUC-CUAGc -5'
15946 5' -54.1 NC_004065.1 + 111985 0.66 0.978601
Target:  5'- uGUACGACGaGCAgggccgccugaUCCUCCGucggGAGGAggaCGa -3'
miRNA:   3'- -CAUGCUGC-CGU-----------AGGGGGU----UUCCUa--GC- -5'
15946 5' -54.1 NC_004065.1 + 35839 0.66 0.978148
Target:  5'- --gUGACGGCGgagucuuaccacCCCCgGGGGGAUCc -3'
miRNA:   3'- cauGCUGCCGUa-----------GGGGgUUUCCUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.