miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 77954 0.66 0.999786
Target:  5'- --cGAUCuACGUgacgucgagccCCGAGACgCUGgCCGCg -3'
miRNA:   3'- cuaUUAG-UGCA-----------GGUUCUG-GACaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 54644 0.66 0.999786
Target:  5'- --gGAUCGuCGUCC---GCCUGcugCCGCa -3'
miRNA:   3'- cuaUUAGU-GCAGGuucUGGACa--GGCG- -5'
15947 3' -49.5 NC_004065.1 + 27876 0.66 0.999786
Target:  5'- aGAUGG--ACGgCCGGGACCUccGUCCGa -3'
miRNA:   3'- -CUAUUagUGCaGGUUCUGGA--CAGGCg -5'
15947 3' -49.5 NC_004065.1 + 157707 0.66 0.99973
Target:  5'- aGGUGAUCACcgUCGGGACCgcgGU-CGCg -3'
miRNA:   3'- -CUAUUAGUGcaGGUUCUGGa--CAgGCG- -5'
15947 3' -49.5 NC_004065.1 + 107619 0.66 0.99973
Target:  5'- cGGUAuAUCcCGUCCAGgugauGACCUGauggCUGCa -3'
miRNA:   3'- -CUAU-UAGuGCAGGUU-----CUGGACa---GGCG- -5'
15947 3' -49.5 NC_004065.1 + 165857 0.66 0.99973
Target:  5'- cGGUAuacUUGCGuaacUCCGAGACCagGUCgGCg -3'
miRNA:   3'- -CUAUu--AGUGC----AGGUUCUGGa-CAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 146531 0.66 0.99966
Target:  5'- --aGAUCAgGUCCuuggucGGCCUGcCCGa -3'
miRNA:   3'- cuaUUAGUgCAGGuu----CUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 152417 0.66 0.99966
Target:  5'- ---cGUCACGgccaaaaCCAAGGCCUGcgUCGUc -3'
miRNA:   3'- cuauUAGUGCa------GGUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 217484 0.66 0.99966
Target:  5'- -----cCACGUUCAAGAUCacgcagGUUCGCu -3'
miRNA:   3'- cuauuaGUGCAGGUUCUGGa-----CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 65615 0.66 0.999652
Target:  5'- ---cAUCGCGUUCAcgcuggaccaggaGGACCUGacggacCCGCu -3'
miRNA:   3'- cuauUAGUGCAGGU-------------UCUGGACa-----GGCG- -5'
15947 3' -49.5 NC_004065.1 + 78760 0.66 0.999611
Target:  5'- cGUGAUCacgcagucgagguuaGCGgCCAGGACCUGgaCGCu -3'
miRNA:   3'- cUAUUAG---------------UGCaGGUUCUGGACagGCG- -5'
15947 3' -49.5 NC_004065.1 + 116476 0.66 0.999575
Target:  5'- cGAUGGUgAuCGUCCAggucAGGCCUuUCCuGCu -3'
miRNA:   3'- -CUAUUAgU-GCAGGU----UCUGGAcAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 58038 0.66 0.999575
Target:  5'- uGAUGGUCGuCGUUCAcgacGACCccUCCGCc -3'
miRNA:   3'- -CUAUUAGU-GCAGGUu---CUGGacAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 88871 0.66 0.999575
Target:  5'- ---cGUCACGUCgAAguGACCgacgCCGCa -3'
miRNA:   3'- cuauUAGUGCAGgUU--CUGGaca-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 117027 0.66 0.999575
Target:  5'- ----cUCACGUgccgaCCGAGACgCUGcaCCGCg -3'
miRNA:   3'- cuauuAGUGCA-----GGUUCUG-GACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 90336 0.66 0.999575
Target:  5'- -----gCGCGUCCGcGaACUcGUCCGCg -3'
miRNA:   3'- cuauuaGUGCAGGUuC-UGGaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 41771 0.66 0.999575
Target:  5'- aGAUGA-C-CG-CC--GACCUGUCCGCc -3'
miRNA:   3'- -CUAUUaGuGCaGGuuCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 149832 0.66 0.999484
Target:  5'- --gGAUCugGUCCuccaggcaccugauGACCUGU-CGCc -3'
miRNA:   3'- cuaUUAGugCAGGuu------------CUGGACAgGCG- -5'
15947 3' -49.5 NC_004065.1 + 161058 0.66 0.999473
Target:  5'- ---cAUCuccuCGUCCGAGAUCUGcUUGCg -3'
miRNA:   3'- cuauUAGu---GCAGGUUCUGGACaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 152489 0.66 0.999473
Target:  5'- --cGGUCGCGcgCCGGuACUUGUCCaGCa -3'
miRNA:   3'- cuaUUAGUGCa-GGUUcUGGACAGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.