Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15947 | 3' | -49.5 | NC_004065.1 | + | 21647 | 1.14 | 0.009605 |
Target: 5'- cGAUAAUCACGUCCAAGACCUGUCCGCg -3' miRNA: 3'- -CUAUUAGUGCAGGUUCUGGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 28310 | 0.82 | 0.570142 |
Target: 5'- --aGAUCACGUCgCcccgugaagacggacAGGGCCUGUCCGCg -3' miRNA: 3'- cuaUUAGUGCAG-G---------------UUCUGGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 64370 | 0.79 | 0.740496 |
Target: 5'- --gGAUCGCGUCCugcAGGCuCUGUCCGa -3' miRNA: 3'- cuaUUAGUGCAGGu--UCUG-GACAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 152193 | 0.78 | 0.750327 |
Target: 5'- -----cCGCGUCCgGAGACCUGguUCCGCa -3' miRNA: 3'- cuauuaGUGCAGG-UUCUGGAC--AGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 199654 | 0.76 | 0.872566 |
Target: 5'- --aGGUCACGUCCAuGuCCggGUCCGUg -3' miRNA: 3'- cuaUUAGUGCAGGUuCuGGa-CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 44775 | 0.76 | 0.872566 |
Target: 5'- --cAGgguCGUCCGAGGCCUGggCCGCa -3' miRNA: 3'- cuaUUaguGCAGGUUCUGGACa-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 162891 | 0.75 | 0.886937 |
Target: 5'- --cGAUCGCGUCCAGGcgcgcGCCgcUGUCCaGCa -3' miRNA: 3'- cuaUUAGUGCAGGUUC-----UGG--ACAGG-CG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 122141 | 0.74 | 0.918752 |
Target: 5'- --aGAUCACGUCCGuGAUCUG-CCGg -3' miRNA: 3'- cuaUUAGUGCAGGUuCUGGACaGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 88293 | 0.73 | 0.953051 |
Target: 5'- uGAUGAggccggcguUCACGUCCucGGCCUcGUCgCGCc -3' miRNA: 3'- -CUAUU---------AGUGCAGGuuCUGGA-CAG-GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 151249 | 0.73 | 0.953051 |
Target: 5'- ------aGCGUCCAGGuCCUGgCCGCu -3' miRNA: 3'- cuauuagUGCAGGUUCuGGACaGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 161489 | 0.73 | 0.939814 |
Target: 5'- --aGAUCGCGUCCAGGAUCUugcgguaaGUCgCGUc -3' miRNA: 3'- cuaUUAGUGCAGGUUCUGGA--------CAG-GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 27389 | 0.73 | 0.939814 |
Target: 5'- uGAUGAgcacUCAgGU-CGAGGCCUGUCCGg -3' miRNA: 3'- -CUAUU----AGUgCAgGUUCUGGACAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 51535 | 0.72 | 0.960692 |
Target: 5'- ---cGUCGCGUCCGAugaugaagauGACCUGUCuCGa -3' miRNA: 3'- cuauUAGUGCAGGUU----------CUGGACAG-GCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 138058 | 0.72 | 0.967428 |
Target: 5'- uGGUGAUCACgGUCguGGGCUUGUgUCGCu -3' miRNA: 3'- -CUAUUAGUG-CAGguUCUGGACA-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 28701 | 0.72 | 0.960692 |
Target: 5'- ----cUCACGUCCcggcagggcgGAGAuCCUGUCCGa -3' miRNA: 3'- cuauuAGUGCAGG----------UUCU-GGACAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 164856 | 0.72 | 0.967428 |
Target: 5'- --cGAUCACGUCUuuGACgCUGacgagCCGCg -3' miRNA: 3'- cuaUUAGUGCAGGuuCUG-GACa----GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 112523 | 0.71 | 0.975933 |
Target: 5'- --gGAUCGCGUCCGgAGACUg--CUGCg -3' miRNA: 3'- cuaUUAGUGCAGGU-UCUGGacaGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 138589 | 0.71 | 0.980618 |
Target: 5'- ------gGCGUCC-AGGCCUucaGUCCGCu -3' miRNA: 3'- cuauuagUGCAGGuUCUGGA---CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 139674 | 0.71 | 0.980618 |
Target: 5'- --gGAUCGCGUUCAucgcgacgcGGACgaGUUCGCg -3' miRNA: 3'- cuaUUAGUGCAGGU---------UCUGgaCAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 123646 | 0.71 | 0.980618 |
Target: 5'- uGAUGAUCACgGUCCuGGACCgcaggaGUCCc- -3' miRNA: 3'- -CUAUUAGUG-CAGGuUCUGGa-----CAGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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