miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 21647 1.14 0.009605
Target:  5'- cGAUAAUCACGUCCAAGACCUGUCCGCg -3'
miRNA:   3'- -CUAUUAGUGCAGGUUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 28310 0.82 0.570142
Target:  5'- --aGAUCACGUCgCcccgugaagacggacAGGGCCUGUCCGCg -3'
miRNA:   3'- cuaUUAGUGCAG-G---------------UUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 64370 0.79 0.740496
Target:  5'- --gGAUCGCGUCCugcAGGCuCUGUCCGa -3'
miRNA:   3'- cuaUUAGUGCAGGu--UCUG-GACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 152193 0.78 0.750327
Target:  5'- -----cCGCGUCCgGAGACCUGguUCCGCa -3'
miRNA:   3'- cuauuaGUGCAGG-UUCUGGAC--AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 44775 0.76 0.872566
Target:  5'- --cAGgguCGUCCGAGGCCUGggCCGCa -3'
miRNA:   3'- cuaUUaguGCAGGUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 199654 0.76 0.872566
Target:  5'- --aGGUCACGUCCAuGuCCggGUCCGUg -3'
miRNA:   3'- cuaUUAGUGCAGGUuCuGGa-CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 162891 0.75 0.886937
Target:  5'- --cGAUCGCGUCCAGGcgcgcGCCgcUGUCCaGCa -3'
miRNA:   3'- cuaUUAGUGCAGGUUC-----UGG--ACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 122141 0.74 0.918752
Target:  5'- --aGAUCACGUCCGuGAUCUG-CCGg -3'
miRNA:   3'- cuaUUAGUGCAGGUuCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 161489 0.73 0.939814
Target:  5'- --aGAUCGCGUCCAGGAUCUugcgguaaGUCgCGUc -3'
miRNA:   3'- cuaUUAGUGCAGGUUCUGGA--------CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 27389 0.73 0.939814
Target:  5'- uGAUGAgcacUCAgGU-CGAGGCCUGUCCGg -3'
miRNA:   3'- -CUAUU----AGUgCAgGUUCUGGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 151249 0.73 0.953051
Target:  5'- ------aGCGUCCAGGuCCUGgCCGCu -3'
miRNA:   3'- cuauuagUGCAGGUUCuGGACaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 88293 0.73 0.953051
Target:  5'- uGAUGAggccggcguUCACGUCCucGGCCUcGUCgCGCc -3'
miRNA:   3'- -CUAUU---------AGUGCAGGuuCUGGA-CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 51535 0.72 0.960692
Target:  5'- ---cGUCGCGUCCGAugaugaagauGACCUGUCuCGa -3'
miRNA:   3'- cuauUAGUGCAGGUU----------CUGGACAG-GCg -5'
15947 3' -49.5 NC_004065.1 + 28701 0.72 0.960692
Target:  5'- ----cUCACGUCCcggcagggcgGAGAuCCUGUCCGa -3'
miRNA:   3'- cuauuAGUGCAGG----------UUCU-GGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 138058 0.72 0.967428
Target:  5'- uGGUGAUCACgGUCguGGGCUUGUgUCGCu -3'
miRNA:   3'- -CUAUUAGUG-CAGguUCUGGACA-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 164856 0.72 0.967428
Target:  5'- --cGAUCACGUCUuuGACgCUGacgagCCGCg -3'
miRNA:   3'- cuaUUAGUGCAGGuuCUG-GACa----GGCG- -5'
15947 3' -49.5 NC_004065.1 + 112523 0.71 0.975933
Target:  5'- --gGAUCGCGUCCGgAGACUg--CUGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU-UCUGGacaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 138589 0.71 0.980618
Target:  5'- ------gGCGUCC-AGGCCUucaGUCCGCu -3'
miRNA:   3'- cuauuagUGCAGGuUCUGGA---CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 123646 0.71 0.980618
Target:  5'- uGAUGAUCACgGUCCuGGACCgcaggaGUCCc- -3'
miRNA:   3'- -CUAUUAGUG-CAGGuUCUGGa-----CAGGcg -5'
15947 3' -49.5 NC_004065.1 + 139674 0.71 0.980618
Target:  5'- --gGAUCGCGUUCAucgcgacgcGGACgaGUUCGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU---------UCUGgaCAGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.