miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 152058 0.7 0.986321
Target:  5'- aGGUAcuUCACGgcgcUCCAcGACCgcGUCCGCa -3'
miRNA:   3'- -CUAUu-AGUGC----AGGUuCUGGa-CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 143157 0.7 0.989339
Target:  5'- cGGUGAUgACGaCgAGGAcuucauCCUGUCCGCc -3'
miRNA:   3'- -CUAUUAgUGCaGgUUCU------GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 67480 0.7 0.990515
Target:  5'- --aGAUCGagucucgagagccCGUCCGAGACCUGgccCgGCg -3'
miRNA:   3'- cuaUUAGU-------------GCAGGUUCUGGACa--GgCG- -5'
15947 3' -49.5 NC_004065.1 + 143995 0.7 0.990515
Target:  5'- aGAUGGUCugGgcgcacaUUCGAGAgcucguCCUGUCCGUc -3'
miRNA:   3'- -CUAUUAGugC-------AGGUUCU------GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 55811 0.7 0.990639
Target:  5'- aGAUGAUCAcCGUCCcuuccacAGACCaucGUcCCGCg -3'
miRNA:   3'- -CUAUUAGU-GCAGGu------UCUGGa--CA-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 29531 0.7 0.990639
Target:  5'- --gGAUCACuUCagagaccaGAGGCCUGUCgGCa -3'
miRNA:   3'- cuaUUAGUGcAGg-------UUCUGGACAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 40795 0.7 0.991811
Target:  5'- ----cUCACGUCCAAGACUUcGUagacgaggaCGCg -3'
miRNA:   3'- cuauuAGUGCAGGUUCUGGA-CAg--------GCG- -5'
15947 3' -49.5 NC_004065.1 + 21951 0.69 0.992863
Target:  5'- -cUGAUgGCGgCCAGGGCCgucGUCgGCa -3'
miRNA:   3'- cuAUUAgUGCaGGUUCUGGa--CAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 109014 0.69 0.993805
Target:  5'- ---cAUCGCcUUCAAGAuCCUGuUCCGCg -3'
miRNA:   3'- cuauUAGUGcAGGUUCU-GGAC-AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 90060 0.69 0.994644
Target:  5'- --cAGUa--GUCCAGGACCUGcCCGa -3'
miRNA:   3'- cuaUUAgugCAGGUUCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 55884 0.69 0.994644
Target:  5'- --cGAUCgGCGUCC-AGGCCgaugCCGCa -3'
miRNA:   3'- cuaUUAG-UGCAGGuUCUGGaca-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 50276 0.69 0.995389
Target:  5'- cGAU--UCGgGccCCGAGACCgccGUCCGCg -3'
miRNA:   3'- -CUAuuAGUgCa-GGUUCUGGa--CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 200398 0.69 0.996047
Target:  5'- uGUGGUCguucuGCG-CCAGGAagaUGUCCGCg -3'
miRNA:   3'- cUAUUAG-----UGCaGGUUCUgg-ACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 184184 0.68 0.997134
Target:  5'- ---cAUCGCGUCCcgugcGGCCgGUCCGa -3'
miRNA:   3'- cuauUAGUGCAGGuu---CUGGaCAGGCg -5'
15947 3' -49.5 NC_004065.1 + 163420 0.68 0.997134
Target:  5'- -----cCGCGgcUCC-GGAuCCUGUCCGCg -3'
miRNA:   3'- cuauuaGUGC--AGGuUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 132002 0.68 0.997134
Target:  5'- --cGAUCgACGUCUccGAgCUGUCCaGCa -3'
miRNA:   3'- cuaUUAG-UGCAGGuuCUgGACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 67852 0.68 0.997576
Target:  5'- -----gCACGgCgAAGACCUGcgCCGCa -3'
miRNA:   3'- cuauuaGUGCaGgUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 109461 0.68 0.997576
Target:  5'- ----cUCACGcagaUCGAGAgCCUGUCCGUc -3'
miRNA:   3'- cuauuAGUGCa---GGUUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 123817 0.68 0.998197
Target:  5'- aGAUA--CACGUUCAucgggaAGACCUGgaacagguccugcaUCCGCg -3'
miRNA:   3'- -CUAUuaGUGCAGGU------UCUGGAC--------------AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 86901 0.68 0.998291
Target:  5'- aGUGAUCAUGUCgAcGACCUuucccGgcgCCGCg -3'
miRNA:   3'- cUAUUAGUGCAGgUuCUGGA-----Ca--GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.